Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1225

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1224 and DvMF_1225 are separated by 132 nucleotidesDvMF_1225 and DvMF_1226 are separated by 237 nucleotides DvMF_1224: DvMF_1224 - two component transcriptional regulator, LytTR family (RefSeq), at 1,508,797 to 1,509,579 _1224 DvMF_1225: DvMF_1225 - signal transduction histidine kinase, LytS (RefSeq), at 1,509,712 to 1,511,523 _1225 DvMF_1226: DvMF_1226 - carbon starvation protein CstA (RefSeq), at 1,511,761 to 1,513,164 _1226 Position (kb) 1509 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1at 1508.867 kb on - strandat 1509.518 kb on + strandat 1510.157 kb on + strand, within DvMF_1225at 1510.158 kb on - strand, within DvMF_1225at 1510.362 kb on + strand, within DvMF_1225at 1510.382 kb on + strand, within DvMF_1225at 1510.497 kb on - strand, within DvMF_1225at 1510.540 kb on - strand, within DvMF_1225at 1510.743 kb on + strand, within DvMF_1225at 1510.743 kb on + strand, within DvMF_1225at 1510.843 kb on + strand, within DvMF_1225at 1511.085 kb on - strand, within DvMF_1225at 1511.248 kb on + strand, within DvMF_1225at 1511.574 kb on - strandat 1511.771 kb on + strandat 1511.873 kb on - strandat 1511.968 kb on + strand, within DvMF_1226at 1511.983 kb on - strand, within DvMF_1226at 1512.516 kb on - strand, within DvMF_1226

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,508,867 - -1.8
1,509,518 + -1.4
1,510,157 + DvMF_1225 0.25 -1.5
1,510,158 - DvMF_1225 0.25 -1.3
1,510,362 + DvMF_1225 0.36 -1.6
1,510,382 + DvMF_1225 0.37 -1.3
1,510,497 - DvMF_1225 0.43 -1.9
1,510,540 - DvMF_1225 0.46 +0.5
1,510,743 + DvMF_1225 0.57 -1.7
1,510,743 + DvMF_1225 0.57 -1.1
1,510,843 + DvMF_1225 0.62 -1.8
1,511,085 - DvMF_1225 0.76 -2.0
1,511,248 + DvMF_1225 0.85 -1.8
1,511,574 - -0.2
1,511,771 + -0.2
1,511,873 - -0.5
1,511,968 + DvMF_1226 0.15 -0.4
1,511,983 - DvMF_1226 0.16 +0.1
1,512,516 - DvMF_1226 0.54 -0.4

Or see this region's nucleotide sequence