Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1138

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1136 and DvMF_1137 are separated by 226 nucleotidesDvMF_1137 and DvMF_1138 are separated by 5 nucleotidesDvMF_1138 and DvMF_1139 overlap by 1 nucleotidesDvMF_1139 and DvMF_1140 are separated by 164 nucleotides DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385 _1136 DvMF_1137: DvMF_1137 - orotidine 5'-phosphate decarboxylase (RefSeq), at 1,395,612 to 1,396,364 _1137 DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999 _1138 DvMF_1139: DvMF_1139 - hypothetical protein (RefSeq), at 1,396,999 to 1,397,265 _1139 DvMF_1140: DvMF_1140 - hypothetical protein (RefSeq), at 1,397,430 to 1,398,311 _1140 Position (kb) 1396 1397Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1395.552 kb on + strandat 1395.689 kb on - strand, within DvMF_1137at 1395.777 kb on + strand, within DvMF_1137at 1395.846 kb on + strand, within DvMF_1137at 1396.012 kb on - strand, within DvMF_1137at 1396.012 kb on - strand, within DvMF_1137at 1396.216 kb on - strand, within DvMF_1137at 1397.177 kb on + strand, within DvMF_1139at 1397.654 kb on + strand, within DvMF_1140at 1397.836 kb on + strand, within DvMF_1140

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,395,552 + -0.7
1,395,689 - DvMF_1137 0.10 -0.9
1,395,777 + DvMF_1137 0.22 -1.7
1,395,846 + DvMF_1137 0.31 -1.4
1,396,012 - DvMF_1137 0.53 -0.6
1,396,012 - DvMF_1137 0.53 -1.2
1,396,216 - DvMF_1137 0.80 -1.0
1,397,177 + DvMF_1139 0.67 -3.1
1,397,654 + DvMF_1140 0.25 +1.6
1,397,836 + DvMF_1140 0.46 +1.9

Or see this region's nucleotide sequence