Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0764

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0763 and DvMF_0764 are separated by 242 nucleotidesDvMF_0764 and DvMF_0765 overlap by 4 nucleotides DvMF_0763: DvMF_0763 - diphosphate--fructose-6-phosphate 1-phosphotransferase (RefSeq), at 910,188 to 911,534 _0763 DvMF_0764: DvMF_0764 - UvrD/REP helicase (RefSeq), at 911,777 to 915,262 _0764 DvMF_0765: DvMF_0765 - hypothetical protein (RefSeq), at 915,259 to 918,561 _0765 Position (kb) 911 912 913 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.796 kb on + strand, within DvMF_0763at 910.804 kb on - strand, within DvMF_0763at 911.161 kb on + strand, within DvMF_0763at 911.243 kb on + strand, within DvMF_0763at 911.249 kb on - strand, within DvMF_0763at 911.527 kb on - strandat 911.719 kb on + strandat 911.837 kb on - strandat 913.367 kb on + strand, within DvMF_0764at 914.118 kb on - strand, within DvMF_0764at 914.380 kb on + strand, within DvMF_0764at 915.094 kb on - strandat 915.287 kb on - strandat 915.317 kb on - strandat 915.646 kb on + strand, within DvMF_0765at 915.896 kb on - strand, within DvMF_0765at 916.210 kb on - strand, within DvMF_0765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
remove
910,796 + DvMF_0763 0.45 -0.6
910,804 - DvMF_0763 0.46 +0.0
911,161 + DvMF_0763 0.72 -1.4
911,243 + DvMF_0763 0.78 -1.1
911,249 - DvMF_0763 0.79 -0.6
911,527 - -0.8
911,719 + -0.0
911,837 - -1.1
913,367 + DvMF_0764 0.46 -1.6
914,118 - DvMF_0764 0.67 -0.9
914,380 + DvMF_0764 0.75 -3.0
915,094 - -2.4
915,287 - +0.2
915,317 - -1.1
915,646 + DvMF_0765 0.12 -1.1
915,896 - DvMF_0765 0.19 -0.4
916,210 - DvMF_0765 0.29 -2.2

Or see this region's nucleotide sequence