Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0566 and DvMF_0567 are separated by 448 nucleotides DvMF_0567 and DvMF_0568 are separated by 196 nucleotides DvMF_0568 and DvMF_0569 are separated by 66 nucleotides
DvMF_0566: DvMF_0566 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 667,820 to 668,419
_0566
DvMF_0567: DvMF_0567 - ATP-dependent chaperone ClpB (RefSeq), at 668,868 to 671,456
_0567
DvMF_0568: DvMF_0568 - hypothetical protein (RefSeq), at 671,653 to 672,003
_0568
DvMF_0569: DvMF_0569 - chaperone DnaJ domain protein (RefSeq), at 672,070 to 673,026
_0569
Position (kb) 668
669
670
671
672 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 667.891 kb on + strand, within DvMF_0566 at 667.914 kb on + strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 668.064 kb on - strand, within DvMF_0566 at 668.637 kb on - strand at 668.652 kb on - strand at 668.657 kb on - strand at 668.929 kb on - strand at 668.940 kb on - strand at 669.288 kb on + strand, within DvMF_0567 at 669.366 kb on + strand, within DvMF_0567 at 669.502 kb on + strand, within DvMF_0567 at 669.603 kb on - strand, within DvMF_0567 at 669.964 kb on + strand, within DvMF_0567 at 670.008 kb on - strand, within DvMF_0567 at 670.186 kb on + strand, within DvMF_0567 at 670.194 kb on - strand, within DvMF_0567 at 670.247 kb on - strand, within DvMF_0567 at 670.540 kb on + strand, within DvMF_0567 at 670.714 kb on + strand, within DvMF_0567 at 670.714 kb on + strand, within DvMF_0567 at 670.722 kb on - strand, within DvMF_0567 at 670.751 kb on - strand, within DvMF_0567 at 670.832 kb on + strand, within DvMF_0567 at 671.073 kb on + strand, within DvMF_0567 at 671.118 kb on - strand, within DvMF_0567 at 671.148 kb on - strand, within DvMF_0567 at 671.247 kb on + strand at 671.644 kb on + strand at 671.664 kb on + strand at 671.730 kb on + strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.738 kb on - strand, within DvMF_0568 at 671.835 kb on + strand, within DvMF_0568 at 671.850 kb on + strand, within DvMF_0568 at 671.878 kb on + strand, within DvMF_0568 at 671.975 kb on - strand at 672.204 kb on - strand, within DvMF_0569 at 672.395 kb on - strand, within DvMF_0569
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml remove 667,891 + DvMF_0566 0.12 -2.4 667,914 + DvMF_0566 0.16 -1.5 667,922 - DvMF_0566 0.17 -1.7 667,922 - DvMF_0566 0.17 -1.3 667,922 - DvMF_0566 0.17 -2.3 668,064 - DvMF_0566 0.41 -2.5 668,637 - -0.7 668,652 - -0.5 668,657 - -0.5 668,929 - -0.1 668,940 - +1.2 669,288 + DvMF_0567 0.16 -0.2 669,366 + DvMF_0567 0.19 +1.7 669,502 + DvMF_0567 0.24 +0.1 669,603 - DvMF_0567 0.28 -0.4 669,964 + DvMF_0567 0.42 +0.3 670,008 - DvMF_0567 0.44 +1.6 670,186 + DvMF_0567 0.51 +1.3 670,194 - DvMF_0567 0.51 -0.0 670,247 - DvMF_0567 0.53 -0.2 670,540 + DvMF_0567 0.65 +0.1 670,714 + DvMF_0567 0.71 -0.1 670,714 + DvMF_0567 0.71 +0.1 670,722 - DvMF_0567 0.72 -0.0 670,751 - DvMF_0567 0.73 -0.1 670,832 + DvMF_0567 0.76 -0.4 671,073 + DvMF_0567 0.85 -0.1 671,118 - DvMF_0567 0.87 -0.1 671,148 - DvMF_0567 0.88 +0.1 671,247 + -0.1 671,644 + +0.1 671,664 + -0.1 671,730 + DvMF_0568 0.22 -0.4 671,738 - DvMF_0568 0.24 -0.4 671,738 - DvMF_0568 0.24 -0.4 671,835 + DvMF_0568 0.52 -1.5 671,850 + DvMF_0568 0.56 -0.4 671,878 + DvMF_0568 0.64 +3.4 671,975 - -0.2 672,204 - DvMF_0569 0.14 -0.2 672,395 - DvMF_0569 0.34 +0.1
Or see this region's nucleotide sequence