Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0506

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0505 and DvMF_0506 are separated by 450 nucleotidesDvMF_0506 and DvMF_0507 overlap by 16 nucleotides DvMF_0505: DvMF_0505 - hypothetical protein (RefSeq), at 592,953 to 594,203 _0505 DvMF_0506: DvMF_0506 - PGAP1 family protein (RefSeq), at 594,654 to 595,739 _0506 DvMF_0507: DvMF_0507 - glycosyl transferase group 1 (RefSeq), at 595,724 to 596,998 _0507 Position (kb) 594 595 596Strain fitness (log2 ratio) -1 0 1 2at 593.919 kb on - strand, within DvMF_0505at 593.943 kb on + strand, within DvMF_0505at 593.950 kb on - strand, within DvMF_0505at 594.066 kb on + strand, within DvMF_0505at 594.098 kb on + strandat 594.329 kb on + strandat 594.503 kb on + strandat 594.511 kb on - strandat 594.573 kb on + strandat 594.583 kb on + strandat 594.583 kb on + strandat 594.999 kb on - strand, within DvMF_0506at 595.335 kb on + strand, within DvMF_0506at 595.335 kb on - strand, within DvMF_0506at 595.718 kb on - strandat 596.177 kb on - strand, within DvMF_0507at 596.184 kb on + strand, within DvMF_0507at 596.198 kb on - strand, within DvMF_0507at 596.316 kb on - strand, within DvMF_0507at 596.526 kb on - strand, within DvMF_0507at 596.536 kb on + strand, within DvMF_0507at 596.726 kb on - strand, within DvMF_0507

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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593,919 - DvMF_0505 0.77 -1.6
593,943 + DvMF_0505 0.79 -0.4
593,950 - DvMF_0505 0.80 -1.6
594,066 + DvMF_0505 0.89 -1.2
594,098 + -0.8
594,329 + -0.8
594,503 + -0.9
594,511 - -0.5
594,573 + -0.4
594,583 + -0.4
594,583 + -0.2
594,999 - DvMF_0506 0.32 -0.1
595,335 + DvMF_0506 0.63 +1.8
595,335 - DvMF_0506 0.63 -0.8
595,718 - +0.9
596,177 - DvMF_0507 0.36 -0.7
596,184 + DvMF_0507 0.36 -0.2
596,198 - DvMF_0507 0.37 -0.3
596,316 - DvMF_0507 0.46 -0.8
596,526 - DvMF_0507 0.63 -0.4
596,536 + DvMF_0507 0.64 -0.1
596,726 - DvMF_0507 0.79 +0.6

Or see this region's nucleotide sequence