Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0391

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0390 and DvMF_0391 are separated by 311 nucleotidesDvMF_0391 and DvMF_0392 are separated by 222 nucleotides DvMF_0390: DvMF_0390 - hypothetical protein (RefSeq), at 458,306 to 459,697 _0390 DvMF_0391: DvMF_0391 - Carbonate dehydratase (RefSeq), at 460,009 to 460,665 _0391 DvMF_0392: DvMF_0392 - integral membrane sensor hybrid histidine kinase (RefSeq), at 460,888 to 463,176 _0392 Position (kb) 460 461Strain fitness (log2 ratio) -1 0 1at 459.116 kb on - strand, within DvMF_0390at 459.200 kb on + strand, within DvMF_0390at 459.216 kb on + strand, within DvMF_0390at 459.224 kb on - strand, within DvMF_0390at 459.231 kb on + strand, within DvMF_0390at 459.231 kb on + strand, within DvMF_0390at 459.231 kb on + strand, within DvMF_0390at 459.356 kb on + strand, within DvMF_0390at 459.502 kb on + strand, within DvMF_0390at 459.857 kb on - strandat 459.950 kb on - strandat 460.026 kb on + strandat 460.060 kb on + strandat 460.382 kb on - strand, within DvMF_0391at 460.688 kb on - strandat 460.710 kb on - strandat 461.302 kb on - strand, within DvMF_0392at 461.439 kb on + strand, within DvMF_0392at 461.639 kb on - strand, within DvMF_0392

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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459,116 - DvMF_0390 0.58 +0.3
459,200 + DvMF_0390 0.64 -0.3
459,216 + DvMF_0390 0.65 -0.0
459,224 - DvMF_0390 0.66 +0.1
459,231 + DvMF_0390 0.66 -0.5
459,231 + DvMF_0390 0.66 +0.6
459,231 + DvMF_0390 0.66 -0.1
459,356 + DvMF_0390 0.75 -0.1
459,502 + DvMF_0390 0.86 -0.0
459,857 - -0.8
459,950 - -0.3
460,026 + +0.0
460,060 + +0.2
460,382 - DvMF_0391 0.57 -0.2
460,688 - +1.0
460,710 - -0.1
461,302 - DvMF_0392 0.18 +0.2
461,439 + DvMF_0392 0.24 -0.2
461,639 - DvMF_0392 0.33 +0.1

Or see this region's nucleotide sequence