Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0357
Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Carbenicillin 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
416,237 | + | DvMF_0356 | 0.27 | -0.8 | |
416,415 | - | DvMF_0356 | 0.42 | -0.9 | |
416,508 | - | DvMF_0356 | 0.50 | -1.2 | |
416,508 | - | DvMF_0356 | 0.50 | -0.8 | |
416,554 | + | DvMF_0356 | 0.54 | -1.4 | |
416,562 | - | DvMF_0356 | 0.54 | -1.8 | |
416,598 | + | DvMF_0356 | 0.57 | -1.8 | |
416,722 | - | DvMF_0356 | 0.68 | -1.6 | |
416,880 | + | DvMF_0356 | 0.81 | -1.8 | |
416,989 | - | DvMF_0356 | 0.90 | -1.1 | |
417,089 | + | -1.0 | |||
417,097 | - | -0.9 | |||
417,099 | + | -0.8 | |||
417,603 | - | DvMF_0357 | 0.53 | -0.1 | |
417,603 | - | DvMF_0357 | 0.53 | +0.7 | |
417,760 | + | DvMF_0357 | 0.71 | -0.1 | |
417,766 | + | DvMF_0357 | 0.71 | -0.4 | |
417,844 | + | DvMF_0357 | 0.80 | +0.3 | |
417,869 | - | DvMF_0357 | 0.83 | +0.2 | |
417,914 | - | DvMF_0357 | 0.88 | +0.1 | |
417,914 | - | DvMF_0357 | 0.88 | -0.5 | |
418,125 | - | -0.5 | |||
418,125 | - | -0.6 | |||
418,125 | - | -0.5 | |||
418,239 | + | -0.7 | |||
418,274 | + | -0.3 | |||
418,358 | + | -0.6 | |||
418,415 | + | -0.5 | |||
418,492 | - | -0.3 | |||
418,507 | + | -1.1 | |||
418,541 | + | +0.0 | |||
418,818 | + | DvMF_0358 | 0.16 | -0.5 | |
418,908 | + | DvMF_0358 | 0.19 | +1.0 | |
418,925 | + | DvMF_0358 | 0.19 | -1.6 |
Or see this region's nucleotide sequence