Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0357

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0356 and DvMF_0357 are separated by 12 nucleotidesDvMF_0357 and DvMF_0358 are separated by 275 nucleotides DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113 _0356 DvMF_0357: DvMF_0357 - histidine triad (HIT) protein (RefSeq), at 417,126 to 418,022 _0357 DvMF_0358: DvMF_0358 - CBS domain containing protein (RefSeq), at 418,298 to 421,531 _0358 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1at 416.237 kb on + strand, within DvMF_0356at 416.415 kb on - strand, within DvMF_0356at 416.508 kb on - strand, within DvMF_0356at 416.508 kb on - strand, within DvMF_0356at 416.554 kb on + strand, within DvMF_0356at 416.562 kb on - strand, within DvMF_0356at 416.598 kb on + strand, within DvMF_0356at 416.722 kb on - strand, within DvMF_0356at 416.880 kb on + strand, within DvMF_0356at 416.989 kb on - strand, within DvMF_0356at 417.089 kb on + strandat 417.097 kb on - strandat 417.099 kb on + strandat 417.603 kb on - strand, within DvMF_0357at 417.603 kb on - strand, within DvMF_0357at 417.760 kb on + strand, within DvMF_0357at 417.766 kb on + strand, within DvMF_0357at 417.844 kb on + strand, within DvMF_0357at 417.869 kb on - strand, within DvMF_0357at 417.914 kb on - strand, within DvMF_0357at 417.914 kb on - strand, within DvMF_0357at 418.125 kb on - strandat 418.125 kb on - strandat 418.125 kb on - strandat 418.239 kb on + strandat 418.274 kb on + strandat 418.358 kb on + strandat 418.415 kb on + strandat 418.492 kb on - strandat 418.507 kb on + strandat 418.541 kb on + strandat 418.818 kb on + strand, within DvMF_0358at 418.908 kb on + strand, within DvMF_0358at 418.925 kb on + strand, within DvMF_0358

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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416,237 + DvMF_0356 0.27 -0.8
416,415 - DvMF_0356 0.42 -0.9
416,508 - DvMF_0356 0.50 -1.2
416,508 - DvMF_0356 0.50 -0.8
416,554 + DvMF_0356 0.54 -1.4
416,562 - DvMF_0356 0.54 -1.8
416,598 + DvMF_0356 0.57 -1.8
416,722 - DvMF_0356 0.68 -1.6
416,880 + DvMF_0356 0.81 -1.8
416,989 - DvMF_0356 0.90 -1.1
417,089 + -1.0
417,097 - -0.9
417,099 + -0.8
417,603 - DvMF_0357 0.53 -0.1
417,603 - DvMF_0357 0.53 +0.7
417,760 + DvMF_0357 0.71 -0.1
417,766 + DvMF_0357 0.71 -0.4
417,844 + DvMF_0357 0.80 +0.3
417,869 - DvMF_0357 0.83 +0.2
417,914 - DvMF_0357 0.88 +0.1
417,914 - DvMF_0357 0.88 -0.5
418,125 - -0.5
418,125 - -0.6
418,125 - -0.5
418,239 + -0.7
418,274 + -0.3
418,358 + -0.6
418,415 + -0.5
418,492 - -0.3
418,507 + -1.1
418,541 + +0.0
418,818 + DvMF_0358 0.16 -0.5
418,908 + DvMF_0358 0.19 +1.0
418,925 + DvMF_0358 0.19 -1.6

Or see this region's nucleotide sequence