Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0350 and DvMF_0351 are separated by 306 nucleotides DvMF_0351 and DvMF_0352 are separated by 130 nucleotides DvMF_0352 and DvMF_0353 are separated by 285 nucleotides
DvMF_0350: DvMF_0350 - extracellular solute-binding protein family 3 (RefSeq), at 408,188 to 409,153
_0350
DvMF_0351: DvMF_0351 - hypothetical protein (RefSeq), at 409,460 to 409,624
_0351
DvMF_0352: DvMF_0352 - putative phage repressor (RefSeq), at 409,755 to 410,540
_0352
DvMF_0353: DvMF_0353 - diaminopimelate decarboxylase (RefSeq), at 410,826 to 412,076
_0353
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 408.795 kb on + strand, within DvMF_0350 at 408.837 kb on - strand, within DvMF_0350 at 408.913 kb on + strand, within DvMF_0350 at 408.924 kb on + strand, within DvMF_0350 at 408.934 kb on + strand, within DvMF_0350 at 409.141 kb on - strand at 409.181 kb on + strand at 409.244 kb on + strand at 409.244 kb on + strand at 409.303 kb on + strand at 409.321 kb on - strand at 409.486 kb on - strand, within DvMF_0351 at 409.500 kb on + strand, within DvMF_0351 at 409.575 kb on - strand, within DvMF_0351 at 409.577 kb on + strand, within DvMF_0351 at 409.577 kb on + strand, within DvMF_0351 at 409.584 kb on + strand, within DvMF_0351 at 410.550 kb on - strand at 410.876 kb on - strand at 411.149 kb on - strand, within DvMF_0353
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml remove 408,795 + DvMF_0350 0.63 -0.2 408,837 - DvMF_0350 0.67 -0.3 408,913 + DvMF_0350 0.75 +0.3 408,924 + DvMF_0350 0.76 -0.8 408,934 + DvMF_0350 0.77 -0.1 409,141 - -1.2 409,181 + -0.2 409,244 + -1.2 409,244 + -0.4 409,303 + -0.4 409,321 - -0.2 409,486 - DvMF_0351 0.16 +0.1 409,500 + DvMF_0351 0.24 +1.1 409,575 - DvMF_0351 0.70 -0.4 409,577 + DvMF_0351 0.71 -0.2 409,577 + DvMF_0351 0.71 -2.3 409,584 + DvMF_0351 0.75 -0.3 410,550 - -0.5 410,876 - -0.3 411,149 - DvMF_0353 0.26 -1.4
Or see this region's nucleotide sequence