Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0289

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0288 and DvMF_0289 are separated by 73 nucleotidesDvMF_0289 and glyQ are separated by 125 nucleotides DvMF_0288: DvMF_0288 - transcriptional regulator, XRE family (RefSeq), at 331,906 to 332,943 _0288 DvMF_0289: DvMF_0289 - Recombination protein O RecO (RefSeq), at 333,017 to 334,537 _0289 DvMF_0290: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 334,663 to 335,538 glyQ Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1at 332.023 kb on - strand, within DvMF_0288at 332.076 kb on + strand, within DvMF_0288at 332.619 kb on - strand, within DvMF_0288at 332.740 kb on + strand, within DvMF_0288at 332.791 kb on + strand, within DvMF_0288at 332.798 kb on + strand, within DvMF_0288at 333.004 kb on + strandat 333.220 kb on - strand, within DvMF_0289at 333.245 kb on - strand, within DvMF_0289at 333.293 kb on + strand, within DvMF_0289at 333.320 kb on + strand, within DvMF_0289at 333.362 kb on - strand, within DvMF_0289at 333.364 kb on + strand, within DvMF_0289at 333.462 kb on - strand, within DvMF_0289at 333.505 kb on - strand, within DvMF_0289at 333.674 kb on + strand, within DvMF_0289at 333.718 kb on - strand, within DvMF_0289at 334.003 kb on + strand, within DvMF_0289at 334.003 kb on + strand, within DvMF_0289at 334.160 kb on + strand, within DvMF_0289at 334.253 kb on - strand, within DvMF_0289at 334.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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332,023 - DvMF_0288 0.11 -1.8
332,076 + DvMF_0288 0.16 -0.3
332,619 - DvMF_0288 0.69 -0.1
332,740 + DvMF_0288 0.80 -1.0
332,791 + DvMF_0288 0.85 -1.8
332,798 + DvMF_0288 0.86 -0.8
333,004 + +0.4
333,220 - DvMF_0289 0.13 -0.3
333,245 - DvMF_0289 0.15 +1.5
333,293 + DvMF_0289 0.18 +0.4
333,320 + DvMF_0289 0.20 -0.3
333,362 - DvMF_0289 0.23 -0.2
333,364 + DvMF_0289 0.23 -1.6
333,462 - DvMF_0289 0.29 -0.4
333,505 - DvMF_0289 0.32 -1.0
333,674 + DvMF_0289 0.43 -0.1
333,718 - DvMF_0289 0.46 -0.6
334,003 + DvMF_0289 0.65 +0.2
334,003 + DvMF_0289 0.65 +0.1
334,160 + DvMF_0289 0.75 -0.1
334,253 - DvMF_0289 0.81 -0.2
334,403 - +0.3

Or see this region's nucleotide sequence