Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0287

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0286 and DvMF_0287 are separated by 405 nucleotidesDvMF_0287 and DvMF_0288 are separated by 78 nucleotides DvMF_0286: DvMF_0286 - hypothetical protein (RefSeq), at 329,212 to 330,459 _0286 DvMF_0287: DvMF_0287 - SurA domain protein (RefSeq), at 330,865 to 331,827 _0287 DvMF_0288: DvMF_0288 - transcriptional regulator, XRE family (RefSeq), at 331,906 to 332,943 _0288 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1at 330.118 kb on + strand, within DvMF_0286at 330.157 kb on - strand, within DvMF_0286at 330.191 kb on - strand, within DvMF_0286at 330.281 kb on - strand, within DvMF_0286at 330.300 kb on - strand, within DvMF_0286at 330.534 kb on + strandat 330.668 kb on - strandat 331.985 kb on + strandat 332.023 kb on - strand, within DvMF_0288at 332.076 kb on + strand, within DvMF_0288at 332.619 kb on - strand, within DvMF_0288at 332.740 kb on + strand, within DvMF_0288at 332.791 kb on + strand, within DvMF_0288at 332.798 kb on + strand, within DvMF_0288

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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330,118 + DvMF_0286 0.73 -0.8
330,157 - DvMF_0286 0.76 -0.2
330,191 - DvMF_0286 0.78 -0.2
330,281 - DvMF_0286 0.86 -1.1
330,300 - DvMF_0286 0.87 -0.3
330,534 + +0.7
330,668 - -0.0
331,985 + -1.5
332,023 - DvMF_0288 0.11 -1.8
332,076 + DvMF_0288 0.16 -0.3
332,619 - DvMF_0288 0.69 -0.1
332,740 + DvMF_0288 0.80 -1.0
332,791 + DvMF_0288 0.85 -1.8
332,798 + DvMF_0288 0.86 -0.8

Or see this region's nucleotide sequence