Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0286

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0285 and DvMF_0286 are separated by 110 nucleotidesDvMF_0286 and DvMF_0287 are separated by 405 nucleotides DvMF_0285: DvMF_0285 - transcription-repair coupling factor (RefSeq), at 325,508 to 329,101 _0285 DvMF_0286: DvMF_0286 - hypothetical protein (RefSeq), at 329,212 to 330,459 _0286 DvMF_0287: DvMF_0287 - SurA domain protein (RefSeq), at 330,865 to 331,827 _0287 Position (kb) 329 330 331Strain fitness (log2 ratio) -1 0 1at 328.269 kb on - strand, within DvMF_0285at 328.286 kb on + strand, within DvMF_0285at 328.351 kb on + strand, within DvMF_0285at 328.378 kb on - strand, within DvMF_0285at 328.397 kb on - strand, within DvMF_0285at 328.450 kb on + strand, within DvMF_0285at 328.524 kb on + strand, within DvMF_0285at 328.548 kb on + strand, within DvMF_0285at 328.587 kb on - strand, within DvMF_0285at 329.101 kb on + strandat 329.104 kb on - strandat 329.165 kb on - strandat 329.366 kb on - strand, within DvMF_0286at 329.368 kb on - strand, within DvMF_0286at 329.394 kb on - strand, within DvMF_0286at 329.400 kb on - strand, within DvMF_0286at 329.697 kb on + strand, within DvMF_0286at 329.715 kb on + strand, within DvMF_0286at 329.767 kb on + strand, within DvMF_0286at 330.118 kb on + strand, within DvMF_0286at 330.157 kb on - strand, within DvMF_0286at 330.191 kb on - strand, within DvMF_0286at 330.281 kb on - strand, within DvMF_0286at 330.300 kb on - strand, within DvMF_0286at 330.534 kb on + strandat 330.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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328,269 - DvMF_0285 0.77 -0.0
328,286 + DvMF_0285 0.77 +0.0
328,351 + DvMF_0285 0.79 -0.9
328,378 - DvMF_0285 0.80 +0.6
328,397 - DvMF_0285 0.80 -1.2
328,450 + DvMF_0285 0.82 -0.3
328,524 + DvMF_0285 0.84 -0.6
328,548 + DvMF_0285 0.85 -1.1
328,587 - DvMF_0285 0.86 -0.9
329,101 + -0.4
329,104 - -0.5
329,165 - -0.4
329,366 - DvMF_0286 0.12 -0.7
329,368 - DvMF_0286 0.12 -0.6
329,394 - DvMF_0286 0.15 -0.1
329,400 - DvMF_0286 0.15 -0.5
329,697 + DvMF_0286 0.39 -0.5
329,715 + DvMF_0286 0.40 -0.9
329,767 + DvMF_0286 0.44 -1.1
330,118 + DvMF_0286 0.73 -0.8
330,157 - DvMF_0286 0.76 -0.2
330,191 - DvMF_0286 0.78 -0.2
330,281 - DvMF_0286 0.86 -1.1
330,300 - DvMF_0286 0.87 -0.3
330,534 + +0.7
330,668 - -0.0

Or see this region's nucleotide sequence