Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0284

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0282 and DvMF_0283 are separated by 222 nucleotidesDvMF_0283 and DvMF_0284 are separated by 456 nucleotidesDvMF_0284 and DvMF_0285 are separated by 347 nucleotides DvMF_0282: DvMF_0282 - nucleotide sugar dehydrogenase (RefSeq), at 322,443 to 323,780 _0282 DvMF_0283: DvMF_0283 - hypothetical protein (RefSeq), at 324,003 to 324,227 _0283 DvMF_0284: DvMF_0284 - CheW protein (RefSeq), at 324,684 to 325,160 _0284 DvMF_0285: DvMF_0285 - transcription-repair coupling factor (RefSeq), at 325,508 to 329,101 _0285 Position (kb) 324 325 326Strain fitness (log2 ratio) -1 0 1at 323.773 kb on + strandat 324.390 kb on - strandat 324.416 kb on - strandat 324.563 kb on - strandat 325.234 kb on + strandat 325.266 kb on + strandat 325.278 kb on + strandat 325.337 kb on - strandat 325.584 kb on + strandat 325.705 kb on + strandat 326.065 kb on - strand, within DvMF_0285

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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323,773 + -0.2
324,390 - -0.3
324,416 - +0.2
324,563 - +0.0
325,234 + -0.1
325,266 + +0.1
325,278 + -0.1
325,337 - -0.6
325,584 + -0.4
325,705 + -0.8
326,065 - DvMF_0285 0.15 -0.7

Or see this region's nucleotide sequence