Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0205

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0204 and DvMF_0205 are separated by 39 nucleotidesDvMF_0205 and DvMF_0206 are separated by 85 nucleotides DvMF_0204: DvMF_0204 - hypothetical protein (RefSeq), at 222,839 to 223,672 _0204 DvMF_0205: DvMF_0205 - hypothetical protein (RefSeq), at 223,712 to 224,239 _0205 DvMF_0206: DvMF_0206 - hypothetical protein (RefSeq), at 224,325 to 225,326 _0206 Position (kb) 223 224 225Strain fitness (log2 ratio) -1 0 1at 222.860 kb on + strandat 222.877 kb on + strandat 222.932 kb on - strand, within DvMF_0204at 222.970 kb on + strand, within DvMF_0204at 222.970 kb on + strand, within DvMF_0204at 222.995 kb on - strand, within DvMF_0204at 223.298 kb on - strand, within DvMF_0204at 223.346 kb on + strand, within DvMF_0204at 223.371 kb on + strand, within DvMF_0204at 223.448 kb on + strand, within DvMF_0204at 223.556 kb on + strand, within DvMF_0204at 223.767 kb on - strand, within DvMF_0205at 224.064 kb on - strand, within DvMF_0205at 225.039 kb on + strand, within DvMF_0206

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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222,860 + -0.7
222,877 + -0.4
222,932 - DvMF_0204 0.11 -0.1
222,970 + DvMF_0204 0.16 -0.3
222,970 + DvMF_0204 0.16 -0.8
222,995 - DvMF_0204 0.19 +0.3
223,298 - DvMF_0204 0.55 +0.0
223,346 + DvMF_0204 0.61 -0.2
223,371 + DvMF_0204 0.64 -0.2
223,448 + DvMF_0204 0.73 +0.2
223,556 + DvMF_0204 0.86 -0.0
223,767 - DvMF_0205 0.10 +1.5
224,064 - DvMF_0205 0.67 -0.4
225,039 + DvMF_0206 0.71 +0.6

Or see this region's nucleotide sequence