Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0192

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0191 and DvMF_0192 are separated by 625 nucleotidesDvMF_0192 and DvMF_0193 are separated by 208 nucleotides DvMF_0191: DvMF_0191 - hypothetical protein (RefSeq), at 207,764 to 208,000 _0191 DvMF_0192: DvMF_0192 - ATP-dependent helicase HrpB (RefSeq), at 208,626 to 211,379 _0192 DvMF_0193: DvMF_0193 - hypothetical protein (RefSeq), at 211,588 to 212,277 _0193 Position (kb) 208 209 210 211 212Strain fitness (log2 ratio) -1 0 1at 207.714 kb on + strandat 207.910 kb on - strand, within DvMF_0191at 207.981 kb on + strandat 208.249 kb on + strandat 208.257 kb on - strandat 208.695 kb on + strandat 208.809 kb on - strandat 208.944 kb on + strand, within DvMF_0192at 208.960 kb on + strand, within DvMF_0192at 209.155 kb on - strand, within DvMF_0192at 209.263 kb on - strand, within DvMF_0192at 209.263 kb on - strand, within DvMF_0192at 209.367 kb on + strand, within DvMF_0192at 209.687 kb on - strand, within DvMF_0192at 209.821 kb on - strand, within DvMF_0192at 209.825 kb on - strand, within DvMF_0192at 209.955 kb on - strand, within DvMF_0192at 210.176 kb on + strand, within DvMF_0192at 210.441 kb on - strand, within DvMF_0192at 210.466 kb on - strand, within DvMF_0192at 210.724 kb on - strand, within DvMF_0192at 210.838 kb on - strand, within DvMF_0192at 211.053 kb on - strand, within DvMF_0192at 211.514 kb on + strandat 211.594 kb on + strandat 211.738 kb on - strand, within DvMF_0193at 212.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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207,714 + -0.3
207,910 - DvMF_0191 0.62 -0.0
207,981 + -0.1
208,249 + +0.1
208,257 - -0.3
208,695 + -0.4
208,809 - -0.1
208,944 + DvMF_0192 0.12 -0.0
208,960 + DvMF_0192 0.12 -0.9
209,155 - DvMF_0192 0.19 -0.9
209,263 - DvMF_0192 0.23 -1.2
209,263 - DvMF_0192 0.23 +0.0
209,367 + DvMF_0192 0.27 -0.5
209,687 - DvMF_0192 0.39 -0.5
209,821 - DvMF_0192 0.43 -1.3
209,825 - DvMF_0192 0.44 -0.5
209,955 - DvMF_0192 0.48 -0.7
210,176 + DvMF_0192 0.56 -0.7
210,441 - DvMF_0192 0.66 -0.4
210,466 - DvMF_0192 0.67 -1.7
210,724 - DvMF_0192 0.76 -0.1
210,838 - DvMF_0192 0.80 -0.9
211,053 - DvMF_0192 0.88 -1.1
211,514 + +0.2
211,594 + -1.0
211,738 - DvMF_0193 0.22 -1.6
212,305 + -0.7

Or see this region's nucleotide sequence