Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0145

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0143 and DvMF_0144 are separated by 72 nucleotidesDvMF_0144 and DvMF_0145 are separated by 125 nucleotidesDvMF_0145 and DvMF_0146 overlap by 4 nucleotidesDvMF_0146 and DvMF_0147 are separated by 6 nucleotides DvMF_0143: DvMF_0143 - putative lipoprotein (RefSeq), at 159,913 to 160,863 _0143 DvMF_0144: DvMF_0144 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 160,936 to 161,139 _0144 DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133 _0145 DvMF_0146: DvMF_0146 - hypothetical protein (RefSeq), at 163,130 to 163,639 _0146 DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674 _0147 Position (kb) 161 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1at 160.463 kb on + strand, within DvMF_0143at 160.494 kb on - strand, within DvMF_0143at 160.558 kb on + strand, within DvMF_0143at 160.599 kb on + strand, within DvMF_0143at 161.231 kb on - strandat 161.633 kb on - strand, within DvMF_0145at 161.709 kb on + strand, within DvMF_0145at 161.973 kb on - strand, within DvMF_0145at 162.007 kb on + strand, within DvMF_0145at 162.033 kb on - strand, within DvMF_0145at 162.046 kb on + strand, within DvMF_0145at 162.060 kb on - strand, within DvMF_0145at 162.060 kb on - strand, within DvMF_0145at 162.150 kb on + strand, within DvMF_0145at 162.171 kb on - strand, within DvMF_0145at 162.423 kb on - strand, within DvMF_0145at 162.558 kb on - strand, within DvMF_0145at 162.886 kb on + strand, within DvMF_0145at 162.886 kb on - strand, within DvMF_0145at 163.103 kb on - strandat 163.127 kb on + strandat 163.375 kb on - strand, within DvMF_0146at 163.466 kb on - strand, within DvMF_0146at 163.624 kb on + strandat 163.624 kb on + strandat 163.632 kb on - strandat 163.632 kb on - strandat 163.632 kb on - strandat 163.682 kb on + strandat 163.690 kb on - strandat 163.874 kb on - strand, within DvMF_0147at 163.900 kb on + strand, within DvMF_0147at 163.942 kb on - strand, within DvMF_0147at 164.022 kb on - strand, within DvMF_0147at 164.037 kb on - strand, within DvMF_0147at 164.048 kb on - strand, within DvMF_0147

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
remove
160,463 + DvMF_0143 0.58 -3.4
160,494 - DvMF_0143 0.61 -3.3
160,558 + DvMF_0143 0.68 -2.7
160,599 + DvMF_0143 0.72 -3.1
161,231 - +0.0
161,633 - DvMF_0145 0.20 -0.5
161,709 + DvMF_0145 0.24 -0.5
161,973 - DvMF_0145 0.38 -0.2
162,007 + DvMF_0145 0.40 -0.5
162,033 - DvMF_0145 0.41 +1.7
162,046 + DvMF_0145 0.42 -0.5
162,060 - DvMF_0145 0.43 -0.5
162,060 - DvMF_0145 0.43 +0.4
162,150 + DvMF_0145 0.47 +0.1
162,171 - DvMF_0145 0.48 -0.5
162,423 - DvMF_0145 0.62 -0.5
162,558 - DvMF_0145 0.69 -0.2
162,886 + DvMF_0145 0.87 -0.4
162,886 - DvMF_0145 0.87 -0.4
163,103 - -0.0
163,127 + -0.5
163,375 - DvMF_0146 0.48 -0.5
163,466 - DvMF_0146 0.66 -0.4
163,624 + -0.5
163,624 + -0.5
163,632 - -0.0
163,632 - -0.9
163,632 - -0.4
163,682 + -1.5
163,690 - -0.8
163,874 - DvMF_0147 0.22 -0.6
163,900 + DvMF_0147 0.25 -0.2
163,942 - DvMF_0147 0.29 -0.7
164,022 - DvMF_0147 0.37 -0.2
164,037 - DvMF_0147 0.38 -0.4
164,048 - DvMF_0147 0.39 -0.3

Or see this region's nucleotide sequence