Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0065

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0064 and DvMF_0065 are separated by 501 nucleotidesDvMF_0065 and DvMF_0066 are separated by 540 nucleotides DvMF_0064: DvMF_0064 - histidine kinase (RefSeq), at 82,288 to 84,084 _0064 DvMF_0065: DvMF_0065 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 84,586 to 85,872 _0065 DvMF_0066: DvMF_0066 - Polysulphide reductase NrfD (RefSeq), at 86,413 to 87,576 _0066 Position (kb) 84 85 86Strain fitness (log2 ratio) -1 0 1 2 3at 83.875 kb on + strand, within DvMF_0064at 84.197 kb on + strandat 84.500 kb on + strandat 84.662 kb on - strandat 84.702 kb on + strandat 84.786 kb on + strand, within DvMF_0065at 84.786 kb on + strand, within DvMF_0065at 84.984 kb on + strand, within DvMF_0065at 84.992 kb on - strand, within DvMF_0065at 85.155 kb on + strand, within DvMF_0065at 85.322 kb on + strand, within DvMF_0065at 85.350 kb on + strand, within DvMF_0065at 85.704 kb on - strand, within DvMF_0065at 85.739 kb on + strand, within DvMF_0065at 85.757 kb on - strandat 85.828 kb on + strandat 86.088 kb on - strandat 86.123 kb on - strandat 86.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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83,875 + DvMF_0064 0.88 -0.1
84,197 + +1.7
84,500 + +1.2
84,662 - +2.7
84,702 + +2.9
84,786 + DvMF_0065 0.16 +2.9
84,786 + DvMF_0065 0.16 +2.8
84,984 + DvMF_0065 0.31 +2.9
84,992 - DvMF_0065 0.32 +2.9
85,155 + DvMF_0065 0.44 +2.9
85,322 + DvMF_0065 0.57 +2.9
85,350 + DvMF_0065 0.59 +3.0
85,704 - DvMF_0065 0.87 +2.8
85,739 + DvMF_0065 0.90 +3.0
85,757 - +3.2
85,828 + +2.7
86,088 - -0.3
86,123 - -0.3
86,182 + +0.3

Or see this region's nucleotide sequence