Strain Fitness in Shewanella amazonensis SB2B around Sama_0542

Experiment: Gelatin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0541 and Sama_0542 are separated by 204 nucleotidesSama_0542 and Sama_0543 are separated by 68 nucleotidesSama_0543 and Sama_0544 are separated by 125 nucleotides Sama_0541: Sama_0541 - serine/threonine protein kinase, putative (RefSeq), at 666,263 to 668,083 _0541 Sama_0542: Sama_0542 - hypothetical protein (RefSeq), at 668,288 to 668,632 _0542 Sama_0543: Sama_0543 - thiopurine S-methyltransferase (RefSeq), at 668,701 to 669,357 _0543 Sama_0544: Sama_0544 - outer membrane porin, putative (RefSeq), at 669,483 to 670,568 _0544 Position (kb) 668 669Strain fitness (log2 ratio) -2 -1 0 1 2 3at 667.332 kb on + strand, within Sama_0541at 667.333 kb on - strand, within Sama_0541at 667.347 kb on - strand, within Sama_0541at 667.410 kb on + strand, within Sama_0541at 667.410 kb on + strand, within Sama_0541at 667.410 kb on + strand, within Sama_0541at 667.410 kb on + strand, within Sama_0541at 667.410 kb on + strand, within Sama_0541at 667.411 kb on - strand, within Sama_0541at 667.435 kb on + strand, within Sama_0541at 667.436 kb on - strand, within Sama_0541at 667.436 kb on - strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.466 kb on + strand, within Sama_0541at 667.467 kb on - strand, within Sama_0541at 667.467 kb on - strand, within Sama_0541at 667.467 kb on - strand, within Sama_0541at 667.538 kb on + strand, within Sama_0541at 667.538 kb on + strand, within Sama_0541at 667.539 kb on - strand, within Sama_0541at 667.539 kb on - strand, within Sama_0541at 667.539 kb on - strand, within Sama_0541at 667.561 kb on - strand, within Sama_0541at 667.561 kb on - strand, within Sama_0541at 667.561 kb on - strand, within Sama_0541at 667.561 kb on - strand, within Sama_0541at 667.613 kb on - strand, within Sama_0541at 667.613 kb on - strand, within Sama_0541at 667.613 kb on - strand, within Sama_0541at 667.613 kb on - strand, within Sama_0541at 667.617 kb on + strand, within Sama_0541at 667.617 kb on + strand, within Sama_0541at 667.617 kb on + strand, within Sama_0541at 667.667 kb on - strand, within Sama_0541at 667.667 kb on - strand, within Sama_0541at 667.804 kb on + strand, within Sama_0541at 667.804 kb on + strand, within Sama_0541at 667.804 kb on + strand, within Sama_0541at 667.805 kb on - strand, within Sama_0541at 667.805 kb on - strand, within Sama_0541at 667.849 kb on + strand, within Sama_0541at 667.849 kb on + strand, within Sama_0541at 667.849 kb on + strand, within Sama_0541at 667.850 kb on - strand, within Sama_0541at 667.850 kb on - strand, within Sama_0541at 667.850 kb on - strand, within Sama_0541at 667.850 kb on - strand, within Sama_0541at 667.850 kb on - strand, within Sama_0541at 667.852 kb on + strand, within Sama_0541at 667.868 kb on + strand, within Sama_0541at 667.868 kb on + strand, within Sama_0541at 667.868 kb on + strand, within Sama_0541at 667.869 kb on - strand, within Sama_0541at 667.869 kb on - strand, within Sama_0541at 667.869 kb on - strand, within Sama_0541at 667.869 kb on - strand, within Sama_0541at 667.937 kb on + strandat 667.937 kb on + strandat 667.937 kb on + strandat 667.937 kb on + strandat 667.938 kb on - strandat 667.938 kb on - strandat 667.973 kb on - strandat 667.973 kb on - strandat 667.973 kb on - strandat 667.973 kb on - strandat 667.982 kb on + strandat 667.999 kb on + strandat 668.025 kb on + strandat 668.025 kb on + strandat 668.026 kb on - strandat 668.026 kb on - strandat 668.047 kb on + strandat 668.049 kb on + strandat 668.050 kb on - strandat 668.050 kb on - strandat 668.106 kb on - strandat 668.108 kb on + strandat 668.108 kb on + strandat 668.109 kb on - strandat 668.109 kb on - strandat 668.109 kb on - strandat 668.119 kb on + strandat 668.149 kb on + strandat 668.150 kb on - strandat 668.150 kb on - strandat 668.165 kb on - strandat 668.236 kb on - strandat 668.236 kb on - strandat 668.236 kb on - strandat 668.244 kb on - strandat 668.244 kb on - strandat 668.245 kb on + strandat 668.245 kb on + strandat 668.324 kb on + strand, within Sama_0542at 668.325 kb on - strand, within Sama_0542at 668.338 kb on + strand, within Sama_0542at 668.338 kb on + strand, within Sama_0542at 668.338 kb on + strand, within Sama_0542at 668.338 kb on + strand, within Sama_0542at 668.339 kb on - strand, within Sama_0542at 668.344 kb on + strand, within Sama_0542at 668.345 kb on - strand, within Sama_0542at 668.390 kb on + strand, within Sama_0542at 668.390 kb on + strand, within Sama_0542at 668.390 kb on + strand, within Sama_0542at 668.390 kb on + strand, within Sama_0542at 668.391 kb on - strand, within Sama_0542at 668.392 kb on + strand, within Sama_0542at 668.393 kb on - strand, within Sama_0542at 668.417 kb on + strand, within Sama_0542at 668.417 kb on + strand, within Sama_0542at 668.417 kb on + strand, within Sama_0542at 668.417 kb on + strand, within Sama_0542at 668.418 kb on - strand, within Sama_0542at 668.418 kb on - strand, within Sama_0542at 668.418 kb on - strand, within Sama_0542at 668.418 kb on - strand, within Sama_0542at 668.501 kb on - strand, within Sama_0542at 668.501 kb on - strand, within Sama_0542at 668.501 kb on - strand, within Sama_0542at 668.523 kb on + strand, within Sama_0542at 668.552 kb on + strand, within Sama_0542at 668.553 kb on - strand, within Sama_0542at 668.553 kb on - strand, within Sama_0542at 668.664 kb on + strandat 668.670 kb on - strandat 668.689 kb on + strandat 668.690 kb on - strandat 668.811 kb on + strand, within Sama_0543at 668.811 kb on + strand, within Sama_0543at 668.812 kb on - strand, within Sama_0543at 668.812 kb on - strand, within Sama_0543at 668.975 kb on + strand, within Sama_0543at 668.975 kb on + strand, within Sama_0543at 668.975 kb on + strand, within Sama_0543at 668.975 kb on + strand, within Sama_0543at 668.976 kb on - strand, within Sama_0543at 668.976 kb on - strand, within Sama_0543at 668.976 kb on - strand, within Sama_0543at 668.976 kb on - strand, within Sama_0543at 669.005 kb on + strand, within Sama_0543at 669.006 kb on - strand, within Sama_0543at 669.006 kb on - strand, within Sama_0543at 669.109 kb on + strand, within Sama_0543at 669.109 kb on + strand, within Sama_0543at 669.109 kb on + strand, within Sama_0543at 669.109 kb on + strand, within Sama_0543at 669.110 kb on - strand, within Sama_0543at 669.117 kb on + strand, within Sama_0543at 669.118 kb on - strand, within Sama_0543at 669.131 kb on + strand, within Sama_0543at 669.131 kb on + strand, within Sama_0543at 669.162 kb on + strand, within Sama_0543at 669.162 kb on + strand, within Sama_0543at 669.162 kb on + strand, within Sama_0543at 669.245 kb on - strand, within Sama_0543at 669.257 kb on + strand, within Sama_0543at 669.257 kb on + strand, within Sama_0543at 669.337 kb on + strandat 669.337 kb on + strandat 669.337 kb on + strandat 669.337 kb on + strandat 669.351 kb on + strandat 669.351 kb on + strandat 669.352 kb on - strandat 669.355 kb on + strandat 669.355 kb on + strandat 669.355 kb on + strandat 669.364 kb on + strandat 669.364 kb on + strandat 669.376 kb on + strandat 669.376 kb on + strandat 669.376 kb on + strandat 669.376 kb on + strandat 669.377 kb on - strandat 669.377 kb on - strandat 669.377 kb on - strandat 669.485 kb on - strandat 669.485 kb on - strandat 669.493 kb on + strandat 669.494 kb on - strandat 669.494 kb on - strandat 669.498 kb on + strandat 669.498 kb on + strandat 669.498 kb on + strandat 669.499 kb on - strandat 669.499 kb on - strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.568 kb on + strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.569 kb on - strandat 669.577 kb on + strandat 669.577 kb on + strandat 669.578 kb on - strandat 669.613 kb on + strand, within Sama_0544at 669.629 kb on + strand, within Sama_0544at 669.629 kb on + strand, within Sama_0544at 669.629 kb on + strand, within Sama_0544at 669.629 kb on + strand, within Sama_0544at 669.630 kb on - strand, within Sama_0544at 669.630 kb on - strand, within Sama_0544

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin
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667,332 + Sama_0541 0.59 +1.0
667,333 - Sama_0541 0.59 +0.6
667,347 - Sama_0541 0.60 +1.4
667,410 + Sama_0541 0.63 -0.6
667,410 + Sama_0541 0.63 +1.1
667,410 + Sama_0541 0.63 -0.6
667,410 + Sama_0541 0.63 -1.4
667,410 + Sama_0541 0.63 +0.9
667,411 - Sama_0541 0.63 +0.1
667,435 + Sama_0541 0.64 -0.1
667,436 - Sama_0541 0.64 -0.8
667,436 - Sama_0541 0.64 +0.5
667,466 + Sama_0541 0.66 -0.7
667,466 + Sama_0541 0.66 +1.1
667,466 + Sama_0541 0.66 +0.5
667,466 + Sama_0541 0.66 -0.0
667,466 + Sama_0541 0.66 -0.6
667,466 + Sama_0541 0.66 -0.1
667,466 + Sama_0541 0.66 -1.1
667,466 + Sama_0541 0.66 +0.1
667,466 + Sama_0541 0.66 -0.1
667,466 + Sama_0541 0.66 +0.9
667,467 - Sama_0541 0.66 -0.6
667,467 - Sama_0541 0.66 +0.0
667,467 - Sama_0541 0.66 -0.2
667,538 + Sama_0541 0.70 +0.5
667,538 + Sama_0541 0.70 -0.4
667,539 - Sama_0541 0.70 +0.9
667,539 - Sama_0541 0.70 +1.5
667,539 - Sama_0541 0.70 -1.9
667,561 - Sama_0541 0.71 -0.2
667,561 - Sama_0541 0.71 -0.3
667,561 - Sama_0541 0.71 +0.6
667,561 - Sama_0541 0.71 -0.4
667,613 - Sama_0541 0.74 -0.4
667,613 - Sama_0541 0.74 -1.5
667,613 - Sama_0541 0.74 -1.1
667,613 - Sama_0541 0.74 +1.7
667,617 + Sama_0541 0.74 +0.1
667,617 + Sama_0541 0.74 -0.3
667,617 + Sama_0541 0.74 +0.2
667,667 - Sama_0541 0.77 +0.2
667,667 - Sama_0541 0.77 -1.4
667,804 + Sama_0541 0.85 +1.0
667,804 + Sama_0541 0.85 +1.3
667,804 + Sama_0541 0.85 -0.4
667,805 - Sama_0541 0.85 +0.4
667,805 - Sama_0541 0.85 -0.8
667,849 + Sama_0541 0.87 +0.5
667,849 + Sama_0541 0.87 -1.0
667,849 + Sama_0541 0.87 +0.7
667,850 - Sama_0541 0.87 -0.4
667,850 - Sama_0541 0.87 +0.8
667,850 - Sama_0541 0.87 +0.0
667,850 - Sama_0541 0.87 -1.4
667,850 - Sama_0541 0.87 -0.2
667,852 + Sama_0541 0.87 -1.1
667,868 + Sama_0541 0.88 +1.1
667,868 + Sama_0541 0.88 -0.1
667,868 + Sama_0541 0.88 +0.3
667,869 - Sama_0541 0.88 -0.6
667,869 - Sama_0541 0.88 -1.1
667,869 - Sama_0541 0.88 -0.3
667,869 - Sama_0541 0.88 -0.1
667,937 + +1.9
667,937 + -0.9
667,937 + +0.1
667,937 + -0.9
667,938 - +1.7
667,938 - -1.1
667,973 - +0.3
667,973 - -0.2
667,973 - +0.3
667,973 - -0.1
667,982 + -0.1
667,999 + +2.3
668,025 + -0.2
668,025 + +0.4
668,026 - -0.4
668,026 - -1.1
668,047 + -2.0
668,049 + -0.6
668,050 - +0.7
668,050 - +0.2
668,106 - +0.8
668,108 + -0.4
668,108 + -0.6
668,109 - +1.5
668,109 - +0.5
668,109 - +0.9
668,119 + -0.1
668,149 + -0.2
668,150 - -0.0
668,150 - +1.4
668,165 - -0.1
668,236 - +0.2
668,236 - -0.1
668,236 - +0.8
668,244 - -0.1
668,244 - -0.1
668,245 + +1.0
668,245 + +0.5
668,324 + Sama_0542 0.10 -0.3
668,325 - Sama_0542 0.11 -1.1
668,338 + Sama_0542 0.14 -0.6
668,338 + Sama_0542 0.14 -0.1
668,338 + Sama_0542 0.14 -0.6
668,338 + Sama_0542 0.14 +0.4
668,339 - Sama_0542 0.15 -0.1
668,344 + Sama_0542 0.16 +0.1
668,345 - Sama_0542 0.17 -0.1
668,390 + Sama_0542 0.30 -1.3
668,390 + Sama_0542 0.30 +0.1
668,390 + Sama_0542 0.30 -0.2
668,390 + Sama_0542 0.30 -1.0
668,391 - Sama_0542 0.30 +0.1
668,392 + Sama_0542 0.30 +0.7
668,393 - Sama_0542 0.30 +0.3
668,417 + Sama_0542 0.37 -0.4
668,417 + Sama_0542 0.37 -0.3
668,417 + Sama_0542 0.37 +0.0
668,417 + Sama_0542 0.37 -0.6
668,418 - Sama_0542 0.38 -1.0
668,418 - Sama_0542 0.38 -1.2
668,418 - Sama_0542 0.38 +0.2
668,418 - Sama_0542 0.38 +0.9
668,501 - Sama_0542 0.62 +0.3
668,501 - Sama_0542 0.62 -0.4
668,501 - Sama_0542 0.62 +0.4
668,523 + Sama_0542 0.68 +0.4
668,552 + Sama_0542 0.77 -0.6
668,553 - Sama_0542 0.77 +0.1
668,553 - Sama_0542 0.77 -0.7
668,664 + +0.2
668,670 - -1.1
668,689 + +0.7
668,690 - -1.0
668,811 + Sama_0543 0.17 -0.5
668,811 + Sama_0543 0.17 -0.3
668,812 - Sama_0543 0.17 +0.2
668,812 - Sama_0543 0.17 -1.5
668,975 + Sama_0543 0.42 -0.4
668,975 + Sama_0543 0.42 +0.1
668,975 + Sama_0543 0.42 -0.6
668,975 + Sama_0543 0.42 +0.1
668,976 - Sama_0543 0.42 -0.1
668,976 - Sama_0543 0.42 -1.1
668,976 - Sama_0543 0.42 +0.3
668,976 - Sama_0543 0.42 -0.4
669,005 + Sama_0543 0.46 -1.8
669,006 - Sama_0543 0.46 -0.1
669,006 - Sama_0543 0.46 -0.5
669,109 + Sama_0543 0.62 +0.5
669,109 + Sama_0543 0.62 -0.9
669,109 + Sama_0543 0.62 +0.1
669,109 + Sama_0543 0.62 -0.4
669,110 - Sama_0543 0.62 -0.6
669,117 + Sama_0543 0.63 -0.9
669,118 - Sama_0543 0.63 +1.8
669,131 + Sama_0543 0.65 -0.3
669,131 + Sama_0543 0.65 -0.8
669,162 + Sama_0543 0.70 -1.2
669,162 + Sama_0543 0.70 +0.7
669,162 + Sama_0543 0.70 +0.3
669,245 - Sama_0543 0.83 +0.3
669,257 + Sama_0543 0.85 +0.4
669,257 + Sama_0543 0.85 -0.1
669,337 + +0.3
669,337 + -0.2
669,337 + +1.5
669,337 + +0.7
669,351 + -0.5
669,351 + +0.1
669,352 - -0.7
669,355 + +0.8
669,355 + -0.4
669,355 + -0.1
669,364 + +2.9
669,364 + -0.3
669,376 + -0.1
669,376 + -0.3
669,376 + -1.4
669,376 + +0.3
669,377 - +0.4
669,377 - -0.2
669,377 - -0.8
669,485 - -2.7
669,485 - +0.3
669,493 + +0.5
669,494 - -0.2
669,494 - -2.0
669,498 + -0.1
669,498 + -0.1
669,498 + +1.1
669,499 - +0.1
669,499 - -0.2
669,568 + -0.6
669,568 + +1.3
669,568 + +0.2
669,568 + -0.6
669,568 + +0.2
669,568 + -1.9
669,568 + +0.5
669,568 + +0.4
669,568 + -0.5
669,568 + +1.2
669,568 + +0.9
669,568 + +0.9
669,568 + -0.3
669,568 + -0.8
669,568 + +0.8
669,568 + +1.4
669,569 - +0.4
669,569 - +0.4
669,569 - +0.0
669,569 - +0.2
669,569 - +0.5
669,569 - -0.4
669,569 - -0.5
669,569 - +0.1
669,569 - +0.5
669,569 - -0.7
669,569 - +0.2
669,569 - +0.3
669,569 - -2.2
669,569 - -0.3
669,569 - -0.9
669,577 + -0.6
669,577 + -0.6
669,578 - +0.3
669,613 + Sama_0544 0.12 +0.3
669,629 + Sama_0544 0.13 -0.5
669,629 + Sama_0544 0.13 -0.1
669,629 + Sama_0544 0.13 -0.3
669,629 + Sama_0544 0.13 +0.1
669,630 - Sama_0544 0.14 -0.5
669,630 - Sama_0544 0.14 -1.2

Or see this region's nucleotide sequence