Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4176

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4175 and Dshi_4176 are separated by 163 nucleotidesDshi_4176 and Dshi_4177 are separated by 91 nucleotides Dshi_4175: Dshi_4175 - hypothetical protein (RefSeq), at 24,079 to 25,098 _4175 Dshi_4176: Dshi_4176 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 25,262 to 25,924 _4176 Dshi_4177: Dshi_4177 - Acetamidase/Formamidase (RefSeq), at 26,016 to 27,332 _4177 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.359 kb on + strand, within Dshi_4175at 24.443 kb on + strand, within Dshi_4175at 25.139 kb on - strandat 25.159 kb on + strandat 25.448 kb on - strandat 25.501 kb on + strand, within Dshi_4176at 25.714 kb on - strand, within Dshi_4176at 25.745 kb on - strand, within Dshi_4176at 25.999 kb on + strandat 26.002 kb on - strandat 26.073 kb on - strandat 26.302 kb on + strand, within Dshi_4177at 26.302 kb on + strand, within Dshi_4177at 26.310 kb on - strand, within Dshi_4177at 26.322 kb on + strand, within Dshi_4177at 26.610 kb on + strand, within Dshi_4177at 26.610 kb on + strand, within Dshi_4177

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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24,359 + Dshi_4175 0.27 -1.1
24,443 + Dshi_4175 0.36 +1.4
25,139 - -0.1
25,159 + -0.6
25,448 - +1.4
25,501 + Dshi_4176 0.36 -0.3
25,714 - Dshi_4176 0.68 +2.3
25,745 - Dshi_4176 0.73 -1.3
25,999 + +1.4
26,002 - +0.8
26,073 - -1.1
26,302 + Dshi_4177 0.22 -0.9
26,302 + Dshi_4177 0.22 +1.4
26,310 - Dshi_4177 0.22 -1.7
26,322 + Dshi_4177 0.23 +1.4
26,610 + Dshi_4177 0.45 -2.3
26,610 + Dshi_4177 0.45 -0.9

Or see this region's nucleotide sequence