Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4162

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4161 and Dshi_4162 are separated by 10 nucleotidesDshi_4162 and Dshi_4163 overlap by 4 nucleotides Dshi_4161: Dshi_4161 - MltA-interacting MipA family protein (RefSeq), at 8,902 to 9,714 _4161 Dshi_4162: Dshi_4162 - glycosyl transferase group 1 (RefSeq), at 9,725 to 10,768 _4162 Dshi_4163: Dshi_4163 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 10,765 to 12,342 _4163 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1at 9.392 kb on + strand, within Dshi_4161at 9.460 kb on - strand, within Dshi_4161at 10.045 kb on - strand, within Dshi_4162at 10.362 kb on + strand, within Dshi_4162at 10.371 kb on - strand, within Dshi_4162at 10.845 kb on + strandat 11.084 kb on - strand, within Dshi_4163at 11.108 kb on - strandat 11.169 kb on + strand, within Dshi_4163at 11.177 kb on - strand, within Dshi_4163at 11.383 kb on + strand, within Dshi_4163at 11.663 kb on - strand, within Dshi_4163at 11.731 kb on - strand, within Dshi_4163

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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9,392 + Dshi_4161 0.60 +0.4
9,460 - Dshi_4161 0.69 +1.4
10,045 - Dshi_4162 0.31 +1.4
10,362 + Dshi_4162 0.61 -2.6
10,371 - Dshi_4162 0.62 +1.4
10,845 + -1.9
11,084 - Dshi_4163 0.20 -2.6
11,108 - +1.4
11,169 + Dshi_4163 0.26 +0.4
11,177 - Dshi_4163 0.26 -2.7
11,383 + Dshi_4163 0.39 -0.1
11,663 - Dshi_4163 0.57 +1.4
11,731 - Dshi_4163 0.61 +0.4

Or see this region's nucleotide sequence