Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4119 and Dshi_4120 overlap by 4 nucleotides Dshi_4120 and Dshi_4121 are separated by 147 nucleotides Dshi_4121 and Dshi_4122 overlap by 4 nucleotides
Dshi_4119: Dshi_4119 - NAD-dependent epimerase/dehydratase (RefSeq), at 50,748 to 51,629
_4119
Dshi_4120: Dshi_4120 - sugar transferase (RefSeq), at 51,626 to 52,234
_4120
Dshi_4121: Dshi_4121 - glycosyl transferase family 2 (RefSeq), at 52,382 to 54,934
_4121
Dshi_4122: Dshi_4122 - hypothetical protein (RefSeq), at 54,931 to 55,707
_4122
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 52.118 kb on + strand, within Dshi_4120 at 52.146 kb on + strand, within Dshi_4120 at 52.273 kb on + strand at 52.306 kb on - strand at 52.390 kb on + strand at 52.489 kb on - strand at 52.631 kb on + strand at 52.822 kb on - strand, within Dshi_4121 at 52.832 kb on + strand, within Dshi_4121 at 52.857 kb on - strand, within Dshi_4121 at 52.862 kb on - strand, within Dshi_4121 at 53.008 kb on - strand, within Dshi_4121 at 53.014 kb on - strand, within Dshi_4121 at 53.048 kb on + strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.062 kb on + strand, within Dshi_4121 at 53.623 kb on + strand, within Dshi_4121 at 53.722 kb on - strand, within Dshi_4121 at 53.769 kb on + strand, within Dshi_4121 at 54.077 kb on - strand, within Dshi_4121 at 54.346 kb on - strand, within Dshi_4121 at 54.360 kb on + strand, within Dshi_4121 at 54.387 kb on - strand, within Dshi_4121 at 54.581 kb on - strand, within Dshi_4121 at 54.625 kb on + strand, within Dshi_4121 at 54.637 kb on + strand, within Dshi_4121 at 54.693 kb on + strand at 54.738 kb on + strand at 54.777 kb on - strand at 54.972 kb on + strand at 55.039 kb on + strand, within Dshi_4122 at 55.196 kb on + strand, within Dshi_4122 at 55.264 kb on - strand, within Dshi_4122 at 55.328 kb on + strand, within Dshi_4122 at 55.337 kb on + strand, within Dshi_4122 at 55.487 kb on + strand, within Dshi_4122 at 55.559 kb on + strand, within Dshi_4122 at 55.560 kb on + strand, within Dshi_4122 at 55.687 kb on + strand at 55.736 kb on - strand at 55.747 kb on - strand at 55.760 kb on - strand at 55.827 kb on - strand at 55.837 kb on + strand at 55.839 kb on + strand at 55.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 52,118 + Dshi_4120 0.81 +0.3 52,146 + Dshi_4120 0.85 +2.8 52,273 + -2.7 52,306 - -2.2 52,390 + -1.8 52,489 - -2.9 52,631 + -3.3 52,822 - Dshi_4121 0.17 -1.5 52,832 + Dshi_4121 0.18 -0.8 52,857 - Dshi_4121 0.19 +2.6 52,862 - Dshi_4121 0.19 -4.2 53,008 - Dshi_4121 0.25 -1.5 53,014 - Dshi_4121 0.25 +2.4 53,048 + Dshi_4121 0.26 -1.1 53,056 - Dshi_4121 0.26 +0.8 53,056 - Dshi_4121 0.26 -2.9 53,056 - Dshi_4121 0.26 -2.2 53,062 + Dshi_4121 0.27 -2.5 53,623 + Dshi_4121 0.49 +0.8 53,722 - Dshi_4121 0.52 +2.2 53,769 + Dshi_4121 0.54 -1.2 54,077 - Dshi_4121 0.66 -1.5 54,346 - Dshi_4121 0.77 -1.8 54,360 + Dshi_4121 0.77 -2.8 54,387 - Dshi_4121 0.79 -2.7 54,581 - Dshi_4121 0.86 -3.1 54,625 + Dshi_4121 0.88 -1.2 54,637 + Dshi_4121 0.88 -2.2 54,693 + -0.8 54,738 + -2.2 54,777 - -2.8 54,972 + -2.2 55,039 + Dshi_4122 0.14 +1.0 55,196 + Dshi_4122 0.34 -1.5 55,264 - Dshi_4122 0.43 -0.2 55,328 + Dshi_4122 0.51 -1.3 55,337 + Dshi_4122 0.52 -4.1 55,487 + Dshi_4122 0.72 +0.8 55,559 + Dshi_4122 0.81 -2.9 55,560 + Dshi_4122 0.81 -2.0 55,687 + -0.2 55,736 - -0.8 55,747 - +2.8 55,760 - -1.8 55,827 - -0.2 55,837 + +2.4 55,839 + -2.4 55,847 - -0.3
Or see this region's nucleotide sequence