Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4007

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4006 and Dshi_4007 are separated by 38 nucleotidesDshi_4007 and Dshi_4008 are separated by 243 nucleotides Dshi_4006: Dshi_4006 - integrase family protein (RefSeq), at 70,272 to 71,276 _4006 Dshi_4007: Dshi_4007 - type III restriction protein res subunit (RefSeq), at 71,315 to 73,756 _4007 Dshi_4008: Dshi_4008 - putative methylase/helicase (RefSeq), at 74,000 to 76,510 _4008 Position (kb) 71 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1at 74.021 kb on + strandat 74.034 kb on - strandat 74.060 kb on - strandat 74.083 kb on + strandat 74.123 kb on - strandat 74.123 kb on - strandat 74.279 kb on - strand, within Dshi_4008at 74.319 kb on + strand, within Dshi_4008at 74.386 kb on + strand, within Dshi_4008at 74.394 kb on - strand, within Dshi_4008at 74.408 kb on + strand, within Dshi_4008at 74.408 kb on + strand, within Dshi_4008at 74.538 kb on + strand, within Dshi_4008at 74.572 kb on - strand, within Dshi_4008at 74.708 kb on - strand, within Dshi_4008at 74.708 kb on - strand, within Dshi_4008at 74.710 kb on + strand, within Dshi_4008at 74.736 kb on + strand, within Dshi_4008

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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74,021 + -1.0
74,034 - -1.0
74,060 - +0.1
74,083 + -0.3
74,123 - +0.0
74,123 - -0.8
74,279 - Dshi_4008 0.11 -3.0
74,319 + Dshi_4008 0.13 -2.4
74,386 + Dshi_4008 0.15 +0.7
74,394 - Dshi_4008 0.16 -1.1
74,408 + Dshi_4008 0.16 +0.5
74,408 + Dshi_4008 0.16 -1.7
74,538 + Dshi_4008 0.21 +0.7
74,572 - Dshi_4008 0.23 -0.2
74,708 - Dshi_4008 0.28 -0.3
74,708 - Dshi_4008 0.28 -3.1
74,710 + Dshi_4008 0.28 -1.8
74,736 + Dshi_4008 0.29 -0.5

Or see this region's nucleotide sequence