Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3854

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3853 and Dshi_3854 are separated by 47 nucleotidesDshi_3854 and Dshi_3855 are separated by 378 nucleotides Dshi_3853: Dshi_3853 - Resolvase domain (RefSeq), at 58,283 to 59,263 _3853 Dshi_3854: Dshi_3854 - RepA (RefSeq), at 59,311 to 60,357 _3854 Dshi_3855: Dshi_3855 - Cobyrinic acid ac-diamide synthase (RefSeq), at 60,736 to 62,127 _3855 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.738 kb on + strand, within Dshi_3853at 58.796 kb on - strand, within Dshi_3853at 58.835 kb on - strand, within Dshi_3853at 58.851 kb on + strand, within Dshi_3853at 58.859 kb on - strand, within Dshi_3853at 58.882 kb on + strand, within Dshi_3853at 58.890 kb on - strand, within Dshi_3853at 58.890 kb on - strand, within Dshi_3853at 58.996 kb on - strand, within Dshi_3853at 59.003 kb on + strand, within Dshi_3853at 59.025 kb on + strand, within Dshi_3853at 59.033 kb on - strand, within Dshi_3853at 59.062 kb on + strand, within Dshi_3853at 59.149 kb on + strand, within Dshi_3853at 59.157 kb on - strand, within Dshi_3853at 59.157 kb on - strand, within Dshi_3853at 59.157 kb on - strand, within Dshi_3853at 59.157 kb on - strand, within Dshi_3853at 59.198 kb on - strandat 59.212 kb on + strandat 59.293 kb on - strandat 59.316 kb on - strandat 60.585 kb on - strandat 60.618 kb on - strandat 60.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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58,738 + Dshi_3853 0.46 -0.7
58,796 - Dshi_3853 0.52 -0.6
58,835 - Dshi_3853 0.56 -1.2
58,851 + Dshi_3853 0.58 -0.6
58,859 - Dshi_3853 0.59 -2.8
58,882 + Dshi_3853 0.61 -2.6
58,890 - Dshi_3853 0.62 -0.8
58,890 - Dshi_3853 0.62 -1.9
58,996 - Dshi_3853 0.73 -2.3
59,003 + Dshi_3853 0.73 -2.3
59,025 + Dshi_3853 0.76 +2.0
59,033 - Dshi_3853 0.76 -2.2
59,062 + Dshi_3853 0.79 -3.0
59,149 + Dshi_3853 0.88 -1.0
59,157 - Dshi_3853 0.89 +2.0
59,157 - Dshi_3853 0.89 -2.6
59,157 - Dshi_3853 0.89 +0.7
59,157 - Dshi_3853 0.89 -1.8
59,198 - -2.2
59,212 + -0.0
59,293 - -2.7
59,316 - -0.7
60,585 - -1.8
60,618 - -0.6
60,618 - -2.2

Or see this region's nucleotide sequence