Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3852 and Dshi_3853 are separated by 139 nucleotides Dshi_3853 and Dshi_3854 are separated by 47 nucleotides
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Dshi_3853: Dshi_3853 - Resolvase domain (RefSeq), at 58,283 to 59,263
_3853
Dshi_3854: Dshi_3854 - RepA (RefSeq), at 59,311 to 60,357
_3854
Position (kb) 58
59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 57.299 kb on + strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.333 kb on - strand, within Dshi_3852 at 57.651 kb on - strand, within Dshi_3852 at 57.800 kb on + strand, within Dshi_3852 at 57.938 kb on + strand, within Dshi_3852 at 58.241 kb on + strand at 58.258 kb on + strand at 58.286 kb on + strand at 58.296 kb on + strand at 58.738 kb on + strand, within Dshi_3853 at 58.796 kb on - strand, within Dshi_3853 at 58.835 kb on - strand, within Dshi_3853 at 58.851 kb on + strand, within Dshi_3853 at 58.859 kb on - strand, within Dshi_3853 at 58.882 kb on + strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.996 kb on - strand, within Dshi_3853 at 59.003 kb on + strand, within Dshi_3853 at 59.025 kb on + strand, within Dshi_3853 at 59.033 kb on - strand, within Dshi_3853 at 59.062 kb on + strand, within Dshi_3853 at 59.149 kb on + strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.157 kb on - strand, within Dshi_3853 at 59.198 kb on - strand at 59.212 kb on + strand at 59.293 kb on - strand at 59.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 57,299 + Dshi_3852 0.21 -3.8 57,299 + Dshi_3852 0.21 +0.2 57,333 - Dshi_3852 0.24 +1.8 57,651 - Dshi_3852 0.54 -2.7 57,800 + Dshi_3852 0.68 +0.9 57,938 + Dshi_3852 0.81 +1.5 58,241 + +0.6 58,258 + +1.0 58,286 + -0.4 58,296 + -0.4 58,738 + Dshi_3853 0.46 -0.7 58,796 - Dshi_3853 0.52 -0.6 58,835 - Dshi_3853 0.56 -1.2 58,851 + Dshi_3853 0.58 -0.6 58,859 - Dshi_3853 0.59 -2.8 58,882 + Dshi_3853 0.61 -2.6 58,890 - Dshi_3853 0.62 -0.8 58,890 - Dshi_3853 0.62 -1.9 58,996 - Dshi_3853 0.73 -2.3 59,003 + Dshi_3853 0.73 -2.3 59,025 + Dshi_3853 0.76 +2.0 59,033 - Dshi_3853 0.76 -2.2 59,062 + Dshi_3853 0.79 -3.0 59,149 + Dshi_3853 0.88 -1.0 59,157 - Dshi_3853 0.89 +2.0 59,157 - Dshi_3853 0.89 -2.6 59,157 - Dshi_3853 0.89 +0.7 59,157 - Dshi_3853 0.89 -1.8 59,198 - -2.2 59,212 + -0.0 59,293 - -2.7 59,316 - -0.7
Or see this region's nucleotide sequence