Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3633 and Dshi_3634 are separated by 149 nucleotides Dshi_3634 and Dshi_3635 are separated by 169 nucleotides Dshi_3635 and Dshi_3636 are separated by 124 nucleotides Dshi_3636 and Dshi_3637 are separated by 168 nucleotides Dshi_3637 and Dshi_3638 are separated by 43 nucleotides
Dshi_3633: Dshi_3633 - hypothetical protein (RefSeq), at 35,746 to 37,389
_3633
Dshi_3634: Dshi_3634 - hypothetical protein (RefSeq), at 37,539 to 37,766
_3634
Dshi_3635: Dshi_3635 - transcriptional regulator, XRE family (RefSeq), at 37,936 to 38,193
_3635
Dshi_3636: Dshi_3636 - hypothetical protein (RefSeq), at 38,318 to 38,611
_3636
Dshi_3637: Dshi_3637 - hypothetical protein (RefSeq), at 38,780 to 39,133
_3637
Dshi_3638: Dshi_3638 - Lytic transglycosylase catalytic (RefSeq), at 39,177 to 39,797
_3638
Position (kb) 38
39 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 37.335 kb on + strand at 37.343 kb on - strand at 37.348 kb on + strand at 37.384 kb on + strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.446 kb on + strand at 37.469 kb on + strand at 37.469 kb on + strand at 37.479 kb on + strand at 37.482 kb on - strand at 37.482 kb on - strand at 37.494 kb on + strand at 37.506 kb on - strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.507 kb on - strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.530 kb on - strand at 37.537 kb on - strand at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.610 kb on + strand, within Dshi_3634 at 37.634 kb on + strand, within Dshi_3634 at 37.642 kb on - strand, within Dshi_3634 at 37.647 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.672 kb on + strand, within Dshi_3634 at 37.675 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.683 kb on + strand, within Dshi_3634 at 37.702 kb on + strand, within Dshi_3634 at 37.703 kb on + strand, within Dshi_3634 at 37.715 kb on - strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.720 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.744 kb on + strand at 37.750 kb on + strand at 37.750 kb on + strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.758 kb on - strand at 37.777 kb on + strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.794 kb on - strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.821 kb on - strand at 37.821 kb on - strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.829 kb on - strand at 37.829 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.879 kb on + strand at 37.885 kb on + strand at 37.907 kb on + strand at 37.972 kb on - strand, within Dshi_3635 at 37.972 kb on - strand, within Dshi_3635 at 37.982 kb on + strand, within Dshi_3635 at 37.990 kb on - strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.019 kb on - strand, within Dshi_3635 at 38.092 kb on - strand, within Dshi_3635 at 38.093 kb on - strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.113 kb on + strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.118 kb on + strand, within Dshi_3635 at 38.145 kb on + strand, within Dshi_3635 at 38.148 kb on - strand, within Dshi_3635 at 38.153 kb on - strand, within Dshi_3635 at 38.167 kb on - strand, within Dshi_3635 at 38.277 kb on + strand at 38.286 kb on + strand at 38.288 kb on + strand at 38.294 kb on + strand at 38.294 kb on + strand at 38.296 kb on - strand at 38.298 kb on + strand at 38.302 kb on - strand at 38.302 kb on - strand at 38.345 kb on + strand at 38.358 kb on - strand, within Dshi_3636 at 38.362 kb on + strand, within Dshi_3636 at 38.364 kb on + strand, within Dshi_3636 at 38.371 kb on + strand, within Dshi_3636 at 38.380 kb on + strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.417 kb on + strand, within Dshi_3636 at 38.430 kb on - strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.440 kb on + strand, within Dshi_3636 at 38.456 kb on + strand, within Dshi_3636 at 38.472 kb on - strand, within Dshi_3636 at 38.474 kb on - strand, within Dshi_3636 at 38.520 kb on + strand, within Dshi_3636 at 38.537 kb on + strand, within Dshi_3636 at 38.541 kb on + strand, within Dshi_3636 at 38.570 kb on + strand, within Dshi_3636 at 38.572 kb on - strand, within Dshi_3636 at 38.588 kb on - strand at 38.590 kb on - strand at 38.590 kb on - strand at 38.613 kb on + strand at 38.615 kb on + strand at 38.623 kb on - strand at 38.636 kb on + strand at 38.644 kb on - strand at 38.651 kb on + strand at 38.651 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand at 38.783 kb on - strand at 38.785 kb on - strand at 38.913 kb on + strand, within Dshi_3637 at 39.011 kb on + strand, within Dshi_3637 at 39.028 kb on + strand, within Dshi_3637 at 39.042 kb on + strand, within Dshi_3637 at 39.047 kb on + strand, within Dshi_3637 at 39.069 kb on + strand, within Dshi_3637 at 39.077 kb on - strand, within Dshi_3637 at 39.116 kb on - strand at 39.188 kb on - strand at 39.188 kb on - strand at 39.194 kb on - strand at 39.227 kb on + strand at 39.228 kb on - strand at 39.240 kb on - strand, within Dshi_3638 at 39.256 kb on + strand, within Dshi_3638 at 39.274 kb on - strand, within Dshi_3638 at 39.308 kb on + strand, within Dshi_3638 at 39.312 kb on + strand, within Dshi_3638 at 39.320 kb on - strand, within Dshi_3638 at 39.334 kb on + strand, within Dshi_3638 at 39.345 kb on - strand, within Dshi_3638 at 39.360 kb on + strand, within Dshi_3638 at 39.360 kb on + strand, within Dshi_3638 at 39.360 kb on + strand, within Dshi_3638 at 39.368 kb on - strand, within Dshi_3638 at 39.373 kb on - strand, within Dshi_3638 at 39.373 kb on - strand, within Dshi_3638 at 39.380 kb on + strand, within Dshi_3638 at 39.386 kb on - strand, within Dshi_3638 at 39.395 kb on + strand, within Dshi_3638 at 39.402 kb on + strand, within Dshi_3638 at 39.402 kb on + strand, within Dshi_3638 at 39.407 kb on + strand, within Dshi_3638 at 39.410 kb on - strand, within Dshi_3638 at 39.410 kb on - strand, within Dshi_3638 at 39.410 kb on - strand, within Dshi_3638 at 39.426 kb on + strand, within Dshi_3638 at 39.426 kb on + strand, within Dshi_3638 at 39.426 kb on + strand, within Dshi_3638 at 39.430 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.434 kb on - strand, within Dshi_3638 at 39.444 kb on - strand, within Dshi_3638 at 39.460 kb on + strand, within Dshi_3638 at 39.473 kb on - strand, within Dshi_3638 at 39.494 kb on - strand, within Dshi_3638 at 39.507 kb on - strand, within Dshi_3638 at 39.521 kb on - strand, within Dshi_3638 at 39.554 kb on + strand, within Dshi_3638 at 39.556 kb on - strand, within Dshi_3638 at 39.556 kb on - strand, within Dshi_3638 at 39.585 kb on - strand, within Dshi_3638 at 39.600 kb on - strand, within Dshi_3638 at 39.602 kb on - strand, within Dshi_3638
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 37,335 + -3.2 37,343 - +1.1 37,348 + +1.9 37,384 + +0.3 37,392 - -0.0 37,392 - +0.8 37,392 - +1.1 37,446 + -1.9 37,469 + -2.2 37,469 + -1.1 37,479 + -0.8 37,482 - -1.0 37,482 - +0.5 37,494 + -0.3 37,506 - +0.7 37,507 + +0.4 37,507 + -1.5 37,507 - -2.3 37,512 + -0.4 37,512 + -1.5 37,512 + +0.1 37,512 - -0.7 37,520 - +0.1 37,520 - -0.1 37,520 - -0.4 37,520 - -2.1 37,520 - +0.7 37,520 - +0.3 37,520 - +0.5 37,530 - +0.2 37,537 - +0.3 37,605 + Dshi_3634 0.29 -0.6 37,605 + Dshi_3634 0.29 -1.4 37,605 + Dshi_3634 0.29 +0.4 37,610 + Dshi_3634 0.31 -0.5 37,634 + Dshi_3634 0.42 -1.4 37,642 - Dshi_3634 0.45 -1.3 37,647 - Dshi_3634 0.47 -0.3 37,659 - Dshi_3634 0.53 -2.6 37,659 - Dshi_3634 0.53 +0.4 37,672 + Dshi_3634 0.58 -0.7 37,675 - Dshi_3634 0.60 +0.0 37,680 - Dshi_3634 0.62 +0.5 37,680 - Dshi_3634 0.62 -0.1 37,683 + Dshi_3634 0.63 -3.7 37,702 + Dshi_3634 0.71 -1.2 37,703 + Dshi_3634 0.72 +0.1 37,715 - Dshi_3634 0.77 -0.3 37,717 + Dshi_3634 0.78 -2.9 37,717 + Dshi_3634 0.78 -0.6 37,720 - Dshi_3634 0.79 -0.4 37,725 - Dshi_3634 0.82 -3.3 37,725 - Dshi_3634 0.82 -1.6 37,725 - Dshi_3634 0.82 +0.7 37,743 + Dshi_3634 0.89 +3.4 37,743 + Dshi_3634 0.89 -0.5 37,744 + +3.4 37,750 + -0.0 37,750 + -0.8 37,752 - -0.7 37,752 - -0.2 37,752 - -0.2 37,758 - +0.1 37,777 + +0.1 37,786 - +0.5 37,786 - +0.2 37,786 - +0.4 37,794 - -0.5 37,811 + -0.6 37,811 + -0.6 37,811 + +1.0 37,819 - -0.3 37,819 - +1.5 37,819 - -0.7 37,821 - +1.0 37,821 - -1.0 37,826 + -1.2 37,826 + -1.0 37,826 + -0.0 37,829 - -1.3 37,829 - -1.1 37,834 - -2.3 37,834 - -0.5 37,834 - +1.6 37,879 + +1.5 37,885 + +0.1 37,907 + +0.5 37,972 - Dshi_3635 0.14 +0.4 37,972 - Dshi_3635 0.14 +3.1 37,982 + Dshi_3635 0.18 +1.0 37,990 - Dshi_3635 0.21 +0.5 37,992 + Dshi_3635 0.22 -1.2 37,992 + Dshi_3635 0.22 -1.4 37,992 + Dshi_3635 0.22 +0.3 37,992 + Dshi_3635 0.22 +0.8 37,992 + Dshi_3635 0.22 +1.7 37,992 + Dshi_3635 0.22 +0.7 37,992 + Dshi_3635 0.22 +0.5 37,992 + Dshi_3635 0.22 +1.3 37,992 + Dshi_3635 0.22 -0.3 37,992 + Dshi_3635 0.22 -0.3 38,000 - Dshi_3635 0.25 -1.7 38,000 - Dshi_3635 0.25 +0.4 38,000 - Dshi_3635 0.25 -0.2 38,000 - Dshi_3635 0.25 +0.1 38,000 - Dshi_3635 0.25 -0.1 38,000 - Dshi_3635 0.25 -0.9 38,000 - Dshi_3635 0.25 -0.2 38,019 - Dshi_3635 0.32 -1.0 38,092 - Dshi_3635 0.60 -1.8 38,093 - Dshi_3635 0.61 -0.3 38,107 + Dshi_3635 0.66 +0.1 38,107 + Dshi_3635 0.66 +0.3 38,113 + Dshi_3635 0.69 -0.5 38,115 - Dshi_3635 0.69 -1.5 38,115 - Dshi_3635 0.69 +0.6 38,118 + Dshi_3635 0.71 +0.9 38,145 + Dshi_3635 0.81 -0.3 38,148 - Dshi_3635 0.82 -1.1 38,153 - Dshi_3635 0.84 -0.5 38,167 - Dshi_3635 0.90 -3.1 38,277 + +0.1 38,286 + +0.1 38,288 + +0.3 38,294 + -1.2 38,294 + +2.1 38,296 - -0.1 38,298 + +1.3 38,302 - -1.3 38,302 - -1.8 38,345 + -1.3 38,358 - Dshi_3636 0.14 -1.6 38,362 + Dshi_3636 0.15 -1.5 38,364 + Dshi_3636 0.16 -0.6 38,371 + Dshi_3636 0.18 -1.1 38,380 + Dshi_3636 0.21 -0.6 38,406 - Dshi_3636 0.30 -0.7 38,406 - Dshi_3636 0.30 -5.1 38,406 - Dshi_3636 0.30 +1.7 38,417 + Dshi_3636 0.34 -0.5 38,430 - Dshi_3636 0.38 +1.6 38,432 + Dshi_3636 0.39 +0.6 38,432 + Dshi_3636 0.39 -0.0 38,432 + Dshi_3636 0.39 +0.5 38,432 + Dshi_3636 0.39 -0.7 38,432 + Dshi_3636 0.39 -2.2 38,440 + Dshi_3636 0.41 -0.5 38,456 + Dshi_3636 0.47 -1.0 38,472 - Dshi_3636 0.52 -0.6 38,474 - Dshi_3636 0.53 +0.1 38,520 + Dshi_3636 0.69 -0.1 38,537 + Dshi_3636 0.74 -4.5 38,541 + Dshi_3636 0.76 -0.6 38,570 + Dshi_3636 0.86 +0.9 38,572 - Dshi_3636 0.86 -0.3 38,588 - +1.6 38,590 - -0.7 38,590 - +0.4 38,613 + +1.0 38,615 + +0.4 38,623 - -0.6 38,636 + -1.4 38,644 - -0.8 38,651 + +1.6 38,651 + -0.9 38,741 + -0.7 38,741 + -1.3 38,741 + -1.6 38,783 - +0.8 38,785 - -0.4 38,913 + Dshi_3637 0.38 -0.7 39,011 + Dshi_3637 0.65 +0.7 39,028 + Dshi_3637 0.70 -0.1 39,042 + Dshi_3637 0.74 +2.5 39,047 + Dshi_3637 0.75 +3.5 39,069 + Dshi_3637 0.82 -0.0 39,077 - Dshi_3637 0.84 -0.5 39,116 - -1.4 39,188 - -1.4 39,188 - -0.9 39,194 - +0.7 39,227 + +0.2 39,228 - -0.6 39,240 - Dshi_3638 0.10 -0.3 39,256 + Dshi_3638 0.13 +0.4 39,274 - Dshi_3638 0.16 -1.6 39,308 + Dshi_3638 0.21 -0.5 39,312 + Dshi_3638 0.22 -1.6 39,320 - Dshi_3638 0.23 +0.5 39,334 + Dshi_3638 0.25 -0.6 39,345 - Dshi_3638 0.27 -0.4 39,360 + Dshi_3638 0.29 -0.0 39,360 + Dshi_3638 0.29 -1.0 39,360 + Dshi_3638 0.29 +0.4 39,368 - Dshi_3638 0.31 -1.1 39,373 - Dshi_3638 0.32 -0.3 39,373 - Dshi_3638 0.32 +0.8 39,380 + Dshi_3638 0.33 +3.2 39,386 - Dshi_3638 0.34 +0.5 39,395 + Dshi_3638 0.35 -0.3 39,402 + Dshi_3638 0.36 +0.5 39,402 + Dshi_3638 0.36 +1.1 39,407 + Dshi_3638 0.37 -0.5 39,410 - Dshi_3638 0.38 -0.4 39,410 - Dshi_3638 0.38 -1.2 39,410 - Dshi_3638 0.38 -2.6 39,426 + Dshi_3638 0.40 +0.0 39,426 + Dshi_3638 0.40 -0.1 39,426 + Dshi_3638 0.40 -1.0 39,430 - Dshi_3638 0.41 -2.0 39,434 - Dshi_3638 0.41 -1.2 39,434 - Dshi_3638 0.41 -0.7 39,434 - Dshi_3638 0.41 +1.0 39,434 - Dshi_3638 0.41 +0.1 39,434 - Dshi_3638 0.41 -0.3 39,434 - Dshi_3638 0.41 +0.3 39,434 - Dshi_3638 0.41 +0.6 39,434 - Dshi_3638 0.41 -0.6 39,434 - Dshi_3638 0.41 +0.3 39,444 - Dshi_3638 0.43 +0.3 39,460 + Dshi_3638 0.46 -2.0 39,473 - Dshi_3638 0.48 -0.4 39,494 - Dshi_3638 0.51 -0.5 39,507 - Dshi_3638 0.53 -1.0 39,521 - Dshi_3638 0.55 -0.7 39,554 + Dshi_3638 0.61 -2.1 39,556 - Dshi_3638 0.61 -5.1 39,556 - Dshi_3638 0.61 -1.1 39,585 - Dshi_3638 0.66 -2.1 39,600 - Dshi_3638 0.68 +1.3 39,602 - Dshi_3638 0.68 +0.3
Or see this region's nucleotide sequence