Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3087

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3086 and Dshi_3087 are separated by 90 nucleotidesDshi_3087 and Dshi_3088 are separated by 12 nucleotidesDshi_3088 and Dshi_3089 are separated by 24 nucleotides Dshi_3086: Dshi_3086 - beta-lactamase domain protein (RefSeq), at 3,256,765 to 3,257,814 _3086 Dshi_3087: Dshi_3087 - aa3 type cytochrome c oxidase subunit IV (RefSeq), at 3,257,905 to 3,258,042 _3087 Dshi_3088: Dshi_3088 - hypothetical protein (RefSeq), at 3,258,055 to 3,258,663 _3088 Dshi_3089: Dshi_3089 - molybdenum cofactor biosynthesis protein B (RefSeq), at 3,258,688 to 3,259,230 _3089 Position (kb) 3257 3258 3259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3256.935 kb on - strand, within Dshi_3086at 3256.974 kb on - strand, within Dshi_3086at 3257.064 kb on + strand, within Dshi_3086at 3257.089 kb on - strand, within Dshi_3086at 3257.459 kb on - strand, within Dshi_3086at 3257.535 kb on - strand, within Dshi_3086at 3257.591 kb on + strand, within Dshi_3086at 3257.712 kb on + strandat 3257.830 kb on + strandat 3257.906 kb on + strandat 3257.957 kb on - strand, within Dshi_3087at 3258.085 kb on - strandat 3258.197 kb on - strand, within Dshi_3088at 3258.209 kb on + strand, within Dshi_3088at 3258.221 kb on - strand, within Dshi_3088at 3258.339 kb on + strand, within Dshi_3088at 3258.340 kb on - strand, within Dshi_3088at 3258.406 kb on - strand, within Dshi_3088at 3258.574 kb on - strand, within Dshi_3088at 3258.618 kb on + strandat 3258.643 kb on + strandat 3258.657 kb on + strandat 3258.857 kb on + strand, within Dshi_3089at 3258.969 kb on + strand, within Dshi_3089

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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3,256,935 - Dshi_3086 0.16 -3.5
3,256,974 - Dshi_3086 0.20 +1.2
3,257,064 + Dshi_3086 0.28 +1.3
3,257,089 - Dshi_3086 0.31 -0.4
3,257,459 - Dshi_3086 0.66 +1.6
3,257,535 - Dshi_3086 0.73 -2.2
3,257,591 + Dshi_3086 0.79 -0.3
3,257,712 + -2.5
3,257,830 + -1.5
3,257,906 + -1.2
3,257,957 - Dshi_3087 0.38 -0.4
3,258,085 - +1.7
3,258,197 - Dshi_3088 0.23 +0.2
3,258,209 + Dshi_3088 0.25 -0.8
3,258,221 - Dshi_3088 0.27 +3.0
3,258,339 + Dshi_3088 0.47 -1.2
3,258,340 - Dshi_3088 0.47 +0.2
3,258,406 - Dshi_3088 0.58 +0.0
3,258,574 - Dshi_3088 0.85 +0.7
3,258,618 + +2.2
3,258,643 + -1.8
3,258,657 + -0.3
3,258,857 + Dshi_3089 0.31 +0.3
3,258,969 + Dshi_3089 0.52 +2.2

Or see this region's nucleotide sequence