Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3041

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3040 and Dshi_3041 are separated by 118 nucleotidesDshi_3041 and Dshi_3042 are separated by 3 nucleotidesDshi_3042 and Dshi_3043 overlap by 1 nucleotides Dshi_3040: Dshi_3040 - Dihydrodipicolinate reductase (RefSeq), at 3,209,163 to 3,209,972 _3040 Dshi_3041: Dshi_3041 - ribosome-binding factor A (RefSeq), at 3,210,091 to 3,210,498 _3041 Dshi_3042: Dshi_3042 - tRNA pseudouridine synthase B (RefSeq), at 3,210,502 to 3,211,416 _3042 Dshi_3043: Dshi_3043 - protein of unknown function DUF1294 (RefSeq), at 3,211,416 to 3,211,694 _3043 Position (kb) 3210 3211Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3209.103 kb on - strandat 3209.990 kb on - strandat 3210.090 kb on - strandat 3210.251 kb on + strand, within Dshi_3041at 3210.275 kb on + strand, within Dshi_3041at 3210.375 kb on - strand, within Dshi_3041at 3210.492 kb on + strandat 3210.499 kb on + strandat 3210.537 kb on - strandat 3210.580 kb on + strandat 3210.599 kb on - strand, within Dshi_3042at 3210.766 kb on - strand, within Dshi_3042at 3210.873 kb on + strand, within Dshi_3042at 3211.017 kb on + strand, within Dshi_3042at 3211.112 kb on + strand, within Dshi_3042at 3211.182 kb on + strand, within Dshi_3042at 3211.343 kb on - strandat 3211.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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3,209,103 - +2.2
3,209,990 - +1.8
3,210,090 - -1.1
3,210,251 + Dshi_3041 0.39 +2.5
3,210,275 + Dshi_3041 0.45 +1.2
3,210,375 - Dshi_3041 0.70 +1.4
3,210,492 + -1.6
3,210,499 + -3.0
3,210,537 - +3.8
3,210,580 + -1.3
3,210,599 - Dshi_3042 0.11 -1.7
3,210,766 - Dshi_3042 0.29 +1.2
3,210,873 + Dshi_3042 0.41 -2.3
3,211,017 + Dshi_3042 0.56 -0.5
3,211,112 + Dshi_3042 0.67 +0.0
3,211,182 + Dshi_3042 0.74 -0.5
3,211,343 - -0.4
3,211,385 - -0.4

Or see this region's nucleotide sequence