Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3037

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3036 and Dshi_3037 overlap by 4 nucleotidesDshi_3037 and Dshi_3038 are separated by 116 nucleotidesDshi_3038 and Dshi_3039 are separated by 3 nucleotides Dshi_3036: Dshi_3036 - acriflavin resistance protein (RefSeq), at 3,203,392 to 3,206,619 _3036 Dshi_3037: Dshi_3037 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,206,616 to 3,207,824 _3037 Dshi_3038: Dshi_3038 - transcriptional regulator, TetR family (RefSeq), at 3,207,941 to 3,208,633 _3038 Dshi_3039: Dshi_3039 - BLUF domain protein (RefSeq), at 3,208,637 to 3,209,044 _3039 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3205.671 kb on + strand, within Dshi_3036at 3205.677 kb on + strand, within Dshi_3036at 3205.878 kb on - strand, within Dshi_3036at 3205.906 kb on + strand, within Dshi_3036at 3205.921 kb on + strand, within Dshi_3036at 3206.031 kb on + strand, within Dshi_3036at 3206.052 kb on - strand, within Dshi_3036at 3206.053 kb on - strand, within Dshi_3036at 3206.218 kb on - strand, within Dshi_3036at 3206.252 kb on - strand, within Dshi_3036at 3206.295 kb on + strandat 3206.357 kb on - strandat 3206.390 kb on - strandat 3206.444 kb on - strandat 3206.465 kb on - strandat 3206.564 kb on - strandat 3206.594 kb on - strandat 3206.608 kb on - strandat 3206.617 kb on + strandat 3206.667 kb on + strandat 3206.722 kb on + strandat 3206.806 kb on - strand, within Dshi_3037at 3206.840 kb on + strand, within Dshi_3037at 3206.860 kb on - strand, within Dshi_3037at 3206.873 kb on + strand, within Dshi_3037at 3206.937 kb on - strand, within Dshi_3037at 3207.027 kb on - strand, within Dshi_3037at 3207.100 kb on + strand, within Dshi_3037at 3207.100 kb on + strand, within Dshi_3037at 3207.100 kb on + strand, within Dshi_3037at 3207.108 kb on - strand, within Dshi_3037at 3207.108 kb on - strand, within Dshi_3037at 3207.172 kb on + strand, within Dshi_3037at 3207.180 kb on - strand, within Dshi_3037at 3207.194 kb on + strand, within Dshi_3037at 3207.202 kb on - strand, within Dshi_3037at 3207.226 kb on + strand, within Dshi_3037at 3207.273 kb on + strand, within Dshi_3037at 3207.281 kb on - strand, within Dshi_3037at 3207.405 kb on - strand, within Dshi_3037at 3207.405 kb on - strand, within Dshi_3037at 3207.451 kb on - strand, within Dshi_3037at 3207.465 kb on + strand, within Dshi_3037at 3207.480 kb on + strand, within Dshi_3037at 3207.784 kb on + strandat 3207.804 kb on - strandat 3207.999 kb on - strandat 3208.083 kb on + strand, within Dshi_3038at 3208.167 kb on - strand, within Dshi_3038at 3208.198 kb on + strand, within Dshi_3038at 3208.206 kb on - strand, within Dshi_3038at 3208.227 kb on + strand, within Dshi_3038at 3208.271 kb on - strand, within Dshi_3038at 3208.401 kb on + strand, within Dshi_3038at 3208.433 kb on + strand, within Dshi_3038at 3208.443 kb on + strand, within Dshi_3038at 3208.456 kb on - strand, within Dshi_3038at 3208.526 kb on - strand, within Dshi_3038at 3208.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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3,205,671 + Dshi_3036 0.71 -0.2
3,205,677 + Dshi_3036 0.71 +1.2
3,205,878 - Dshi_3036 0.77 -1.4
3,205,906 + Dshi_3036 0.78 +0.4
3,205,921 + Dshi_3036 0.78 +1.2
3,206,031 + Dshi_3036 0.82 +3.2
3,206,052 - Dshi_3036 0.82 -1.2
3,206,053 - Dshi_3036 0.82 -2.9
3,206,218 - Dshi_3036 0.88 -0.8
3,206,252 - Dshi_3036 0.89 -1.6
3,206,295 + +0.2
3,206,357 - -1.4
3,206,390 - +2.2
3,206,444 - -0.4
3,206,465 - -2.0
3,206,564 - -1.3
3,206,594 - -0.8
3,206,608 - -0.4
3,206,617 + -0.8
3,206,667 + -1.9
3,206,722 + +1.2
3,206,806 - Dshi_3037 0.16 -2.6
3,206,840 + Dshi_3037 0.19 +2.7
3,206,860 - Dshi_3037 0.20 -0.8
3,206,873 + Dshi_3037 0.21 +1.2
3,206,937 - Dshi_3037 0.27 +0.0
3,207,027 - Dshi_3037 0.34 +0.2
3,207,100 + Dshi_3037 0.40 +0.2
3,207,100 + Dshi_3037 0.40 +0.6
3,207,100 + Dshi_3037 0.40 -2.2
3,207,108 - Dshi_3037 0.41 -2.5
3,207,108 - Dshi_3037 0.41 -0.8
3,207,172 + Dshi_3037 0.46 +3.2
3,207,180 - Dshi_3037 0.47 -1.2
3,207,194 + Dshi_3037 0.48 -0.3
3,207,202 - Dshi_3037 0.48 -3.2
3,207,226 + Dshi_3037 0.50 +0.2
3,207,273 + Dshi_3037 0.54 +0.5
3,207,281 - Dshi_3037 0.55 +1.2
3,207,405 - Dshi_3037 0.65 +4.0
3,207,405 - Dshi_3037 0.65 +2.7
3,207,451 - Dshi_3037 0.69 -0.3
3,207,465 + Dshi_3037 0.70 +2.2
3,207,480 + Dshi_3037 0.71 +1.0
3,207,784 + -1.2
3,207,804 - +1.2
3,207,999 - -0.4
3,208,083 + Dshi_3038 0.20 -0.4
3,208,167 - Dshi_3038 0.33 +0.2
3,208,198 + Dshi_3038 0.37 +2.2
3,208,206 - Dshi_3038 0.38 -1.8
3,208,227 + Dshi_3038 0.41 -0.8
3,208,271 - Dshi_3038 0.48 +0.2
3,208,401 + Dshi_3038 0.66 -1.2
3,208,433 + Dshi_3038 0.71 +0.5
3,208,443 + Dshi_3038 0.72 +0.4
3,208,456 - Dshi_3038 0.74 +0.9
3,208,526 - Dshi_3038 0.84 +2.3
3,208,627 + +0.5

Or see this region's nucleotide sequence