Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3036 and Dshi_3037 overlap by 4 nucleotides Dshi_3037 and Dshi_3038 are separated by 116 nucleotides Dshi_3038 and Dshi_3039 are separated by 3 nucleotides
Dshi_3036: Dshi_3036 - acriflavin resistance protein (RefSeq), at 3,203,392 to 3,206,619
_3036
Dshi_3037: Dshi_3037 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,206,616 to 3,207,824
_3037
Dshi_3038: Dshi_3038 - transcriptional regulator, TetR family (RefSeq), at 3,207,941 to 3,208,633
_3038
Dshi_3039: Dshi_3039 - BLUF domain protein (RefSeq), at 3,208,637 to 3,209,044
_3039
Position (kb)
3206
3207
3208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3205.671 kb on + strand, within Dshi_3036 at 3205.677 kb on + strand, within Dshi_3036 at 3205.878 kb on - strand, within Dshi_3036 at 3205.906 kb on + strand, within Dshi_3036 at 3205.921 kb on + strand, within Dshi_3036 at 3206.031 kb on + strand, within Dshi_3036 at 3206.052 kb on - strand, within Dshi_3036 at 3206.053 kb on - strand, within Dshi_3036 at 3206.218 kb on - strand, within Dshi_3036 at 3206.252 kb on - strand, within Dshi_3036 at 3206.295 kb on + strand at 3206.357 kb on - strand at 3206.390 kb on - strand at 3206.444 kb on - strand at 3206.465 kb on - strand at 3206.564 kb on - strand at 3206.594 kb on - strand at 3206.608 kb on - strand at 3206.617 kb on + strand at 3206.667 kb on + strand at 3206.722 kb on + strand at 3206.806 kb on - strand, within Dshi_3037 at 3206.840 kb on + strand, within Dshi_3037 at 3206.860 kb on - strand, within Dshi_3037 at 3206.873 kb on + strand, within Dshi_3037 at 3206.937 kb on - strand, within Dshi_3037 at 3207.027 kb on - strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.100 kb on + strand, within Dshi_3037 at 3207.108 kb on - strand, within Dshi_3037 at 3207.108 kb on - strand, within Dshi_3037 at 3207.172 kb on + strand, within Dshi_3037 at 3207.180 kb on - strand, within Dshi_3037 at 3207.194 kb on + strand, within Dshi_3037 at 3207.202 kb on - strand, within Dshi_3037 at 3207.226 kb on + strand, within Dshi_3037 at 3207.273 kb on + strand, within Dshi_3037 at 3207.281 kb on - strand, within Dshi_3037 at 3207.405 kb on - strand, within Dshi_3037 at 3207.405 kb on - strand, within Dshi_3037 at 3207.451 kb on - strand, within Dshi_3037 at 3207.465 kb on + strand, within Dshi_3037 at 3207.480 kb on + strand, within Dshi_3037 at 3207.784 kb on + strand at 3207.804 kb on - strand at 3207.999 kb on - strand at 3208.083 kb on + strand, within Dshi_3038 at 3208.167 kb on - strand, within Dshi_3038 at 3208.198 kb on + strand, within Dshi_3038 at 3208.206 kb on - strand, within Dshi_3038 at 3208.227 kb on + strand, within Dshi_3038 at 3208.271 kb on - strand, within Dshi_3038 at 3208.401 kb on + strand, within Dshi_3038 at 3208.433 kb on + strand, within Dshi_3038 at 3208.443 kb on + strand, within Dshi_3038 at 3208.456 kb on - strand, within Dshi_3038 at 3208.526 kb on - strand, within Dshi_3038 at 3208.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 3,205,671 + Dshi_3036 0.71 -0.2 3,205,677 + Dshi_3036 0.71 +1.2 3,205,878 - Dshi_3036 0.77 -1.4 3,205,906 + Dshi_3036 0.78 +0.4 3,205,921 + Dshi_3036 0.78 +1.2 3,206,031 + Dshi_3036 0.82 +3.2 3,206,052 - Dshi_3036 0.82 -1.2 3,206,053 - Dshi_3036 0.82 -2.9 3,206,218 - Dshi_3036 0.88 -0.8 3,206,252 - Dshi_3036 0.89 -1.6 3,206,295 + +0.2 3,206,357 - -1.4 3,206,390 - +2.2 3,206,444 - -0.4 3,206,465 - -2.0 3,206,564 - -1.3 3,206,594 - -0.8 3,206,608 - -0.4 3,206,617 + -0.8 3,206,667 + -1.9 3,206,722 + +1.2 3,206,806 - Dshi_3037 0.16 -2.6 3,206,840 + Dshi_3037 0.19 +2.7 3,206,860 - Dshi_3037 0.20 -0.8 3,206,873 + Dshi_3037 0.21 +1.2 3,206,937 - Dshi_3037 0.27 +0.0 3,207,027 - Dshi_3037 0.34 +0.2 3,207,100 + Dshi_3037 0.40 +0.2 3,207,100 + Dshi_3037 0.40 +0.6 3,207,100 + Dshi_3037 0.40 -2.2 3,207,108 - Dshi_3037 0.41 -2.5 3,207,108 - Dshi_3037 0.41 -0.8 3,207,172 + Dshi_3037 0.46 +3.2 3,207,180 - Dshi_3037 0.47 -1.2 3,207,194 + Dshi_3037 0.48 -0.3 3,207,202 - Dshi_3037 0.48 -3.2 3,207,226 + Dshi_3037 0.50 +0.2 3,207,273 + Dshi_3037 0.54 +0.5 3,207,281 - Dshi_3037 0.55 +1.2 3,207,405 - Dshi_3037 0.65 +4.0 3,207,405 - Dshi_3037 0.65 +2.7 3,207,451 - Dshi_3037 0.69 -0.3 3,207,465 + Dshi_3037 0.70 +2.2 3,207,480 + Dshi_3037 0.71 +1.0 3,207,784 + -1.2 3,207,804 - +1.2 3,207,999 - -0.4 3,208,083 + Dshi_3038 0.20 -0.4 3,208,167 - Dshi_3038 0.33 +0.2 3,208,198 + Dshi_3038 0.37 +2.2 3,208,206 - Dshi_3038 0.38 -1.8 3,208,227 + Dshi_3038 0.41 -0.8 3,208,271 - Dshi_3038 0.48 +0.2 3,208,401 + Dshi_3038 0.66 -1.2 3,208,433 + Dshi_3038 0.71 +0.5 3,208,443 + Dshi_3038 0.72 +0.4 3,208,456 - Dshi_3038 0.74 +0.9 3,208,526 - Dshi_3038 0.84 +2.3 3,208,627 + +0.5
Or see this region's nucleotide sequence