Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2904

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2903 and Dshi_2904 overlap by 4 nucleotidesDshi_2904 and Dshi_2905 overlap by 1 nucleotidesDshi_2905 and Dshi_2906 overlap by 4 nucleotides Dshi_2903: Dshi_2903 - hypothetical protein (RefSeq), at 3,059,093 to 3,061,177 _2903 Dshi_2904: Dshi_2904 - hypothetical protein (RefSeq), at 3,061,174 to 3,063,948 _2904 Dshi_2905: Dshi_2905 - hypothetical protein (RefSeq), at 3,063,948 to 3,064,850 _2905 Dshi_2906: Dshi_2906 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,064,847 to 3,065,854 _2906 Position (kb) 3061 3062 3063 3064Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3060.245 kb on + strand, within Dshi_2903at 3060.253 kb on + strand, within Dshi_2903at 3060.422 kb on + strand, within Dshi_2903at 3060.468 kb on + strand, within Dshi_2903at 3060.504 kb on - strand, within Dshi_2903at 3060.727 kb on - strand, within Dshi_2903at 3060.864 kb on - strand, within Dshi_2903at 3061.431 kb on + strandat 3061.645 kb on - strand, within Dshi_2904at 3061.698 kb on - strand, within Dshi_2904at 3061.725 kb on - strand, within Dshi_2904at 3061.788 kb on + strand, within Dshi_2904at 3061.820 kb on - strand, within Dshi_2904at 3061.847 kb on - strand, within Dshi_2904at 3061.896 kb on - strand, within Dshi_2904at 3061.962 kb on - strand, within Dshi_2904at 3062.106 kb on - strand, within Dshi_2904at 3062.219 kb on + strand, within Dshi_2904at 3062.297 kb on + strand, within Dshi_2904at 3062.309 kb on - strand, within Dshi_2904at 3062.491 kb on + strand, within Dshi_2904at 3062.565 kb on - strand, within Dshi_2904at 3062.573 kb on + strand, within Dshi_2904at 3062.799 kb on + strand, within Dshi_2904at 3062.853 kb on + strand, within Dshi_2904at 3062.903 kb on + strand, within Dshi_2904at 3063.053 kb on - strand, within Dshi_2904at 3063.161 kb on - strand, within Dshi_2904at 3063.431 kb on - strand, within Dshi_2904at 3063.433 kb on + strand, within Dshi_2904at 3063.433 kb on + strand, within Dshi_2904at 3063.466 kb on - strand, within Dshi_2904at 3063.472 kb on - strand, within Dshi_2904at 3063.646 kb on + strand, within Dshi_2904at 3063.911 kb on - strandat 3063.933 kb on + strandat 3063.984 kb on - strandat 3064.026 kb on + strandat 3064.033 kb on + strandat 3064.070 kb on - strand, within Dshi_2905at 3064.242 kb on + strand, within Dshi_2905at 3064.242 kb on + strand, within Dshi_2905at 3064.323 kb on + strand, within Dshi_2905at 3064.362 kb on + strand, within Dshi_2905at 3064.676 kb on + strand, within Dshi_2905at 3064.693 kb on + strand, within Dshi_2905at 3064.826 kb on + strandat 3064.834 kb on - strandat 3064.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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3,060,245 + Dshi_2903 0.55 -1.4
3,060,253 + Dshi_2903 0.56 -2.8
3,060,422 + Dshi_2903 0.64 -0.4
3,060,468 + Dshi_2903 0.66 -2.8
3,060,504 - Dshi_2903 0.68 -1.2
3,060,727 - Dshi_2903 0.78 -3.1
3,060,864 - Dshi_2903 0.85 +1.8
3,061,431 + -2.6
3,061,645 - Dshi_2904 0.17 -3.7
3,061,698 - Dshi_2904 0.19 -2.4
3,061,725 - Dshi_2904 0.20 +1.2
3,061,788 + Dshi_2904 0.22 +0.3
3,061,820 - Dshi_2904 0.23 +1.2
3,061,847 - Dshi_2904 0.24 +0.5
3,061,896 - Dshi_2904 0.26 -1.2
3,061,962 - Dshi_2904 0.28 +0.0
3,062,106 - Dshi_2904 0.34 +1.2
3,062,219 + Dshi_2904 0.38 +1.5
3,062,297 + Dshi_2904 0.40 -3.2
3,062,309 - Dshi_2904 0.41 +1.2
3,062,491 + Dshi_2904 0.47 +0.6
3,062,565 - Dshi_2904 0.50 +1.2
3,062,573 + Dshi_2904 0.50 -2.5
3,062,799 + Dshi_2904 0.59 +0.2
3,062,853 + Dshi_2904 0.61 +5.0
3,062,903 + Dshi_2904 0.62 -1.6
3,063,053 - Dshi_2904 0.68 +1.2
3,063,161 - Dshi_2904 0.72 -1.4
3,063,431 - Dshi_2904 0.81 -0.4
3,063,433 + Dshi_2904 0.81 -2.2
3,063,433 + Dshi_2904 0.81 +1.2
3,063,466 - Dshi_2904 0.83 -1.8
3,063,472 - Dshi_2904 0.83 +1.2
3,063,646 + Dshi_2904 0.89 +1.2
3,063,911 - -0.8
3,063,933 + -1.2
3,063,984 - +0.2
3,064,026 + +2.7
3,064,033 + +1.2
3,064,070 - Dshi_2905 0.14 +0.9
3,064,242 + Dshi_2905 0.33 -3.7
3,064,242 + Dshi_2905 0.33 +2.2
3,064,323 + Dshi_2905 0.42 -0.4
3,064,362 + Dshi_2905 0.46 -0.8
3,064,676 + Dshi_2905 0.81 +0.2
3,064,693 + Dshi_2905 0.83 +1.2
3,064,826 + +3.6
3,064,834 - -3.1
3,064,935 - -1.2

Or see this region's nucleotide sequence