Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2819

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2818 and Dshi_2819 are separated by 382 nucleotidesDshi_2819 and Dshi_2820 are separated by 84 nucleotides Dshi_2818: Dshi_2818 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 2,974,910 to 2,975,632 _2818 Dshi_2819: Dshi_2819 - hypothetical protein (RefSeq), at 2,976,015 to 2,976,293 _2819 Dshi_2820: Dshi_2820 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,976,378 to 2,977,766 _2820 Position (kb) 2976 2977Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2975.083 kb on + strand, within Dshi_2818at 2975.280 kb on + strand, within Dshi_2818at 2975.288 kb on - strand, within Dshi_2818at 2975.367 kb on + strand, within Dshi_2818at 2975.409 kb on + strand, within Dshi_2818at 2975.412 kb on - strand, within Dshi_2818at 2975.447 kb on - strand, within Dshi_2818at 2975.493 kb on - strand, within Dshi_2818at 2975.649 kb on - strandat 2975.649 kb on - strandat 2975.802 kb on + strandat 2975.872 kb on + strandat 2975.872 kb on + strandat 2975.878 kb on - strandat 2975.900 kb on - strandat 2975.974 kb on + strandat 2976.073 kb on + strand, within Dshi_2819at 2976.084 kb on + strand, within Dshi_2819at 2976.171 kb on - strand, within Dshi_2819at 2976.188 kb on + strand, within Dshi_2819at 2976.233 kb on + strand, within Dshi_2819at 2976.295 kb on + strandat 2976.302 kb on + strandat 2976.355 kb on - strandat 2976.457 kb on + strandat 2976.457 kb on + strandat 2976.516 kb on - strandat 2976.522 kb on - strand, within Dshi_2820at 2976.559 kb on + strand, within Dshi_2820at 2976.559 kb on + strand, within Dshi_2820at 2976.559 kb on + strand, within Dshi_2820at 2976.600 kb on + strand, within Dshi_2820at 2976.662 kb on + strand, within Dshi_2820at 2976.670 kb on - strand, within Dshi_2820at 2976.734 kb on + strand, within Dshi_2820at 2976.789 kb on + strand, within Dshi_2820at 2976.789 kb on + strand, within Dshi_2820at 2976.797 kb on - strand, within Dshi_2820at 2976.878 kb on + strand, within Dshi_2820at 2976.931 kb on + strand, within Dshi_2820at 2976.943 kb on - strand, within Dshi_2820at 2976.955 kb on + strand, within Dshi_2820at 2977.028 kb on - strand, within Dshi_2820at 2977.067 kb on + strand, within Dshi_2820at 2977.079 kb on + strand, within Dshi_2820at 2977.187 kb on + strand, within Dshi_2820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,975,083 + Dshi_2818 0.24 -0.5
2,975,280 + Dshi_2818 0.51 -0.2
2,975,288 - Dshi_2818 0.52 -1.7
2,975,367 + Dshi_2818 0.63 -2.1
2,975,409 + Dshi_2818 0.69 +3.4
2,975,412 - Dshi_2818 0.69 -0.9
2,975,447 - Dshi_2818 0.74 -0.3
2,975,493 - Dshi_2818 0.81 +0.1
2,975,649 - -2.8
2,975,649 - -1.5
2,975,802 + +2.4
2,975,872 + -1.2
2,975,872 + +2.1
2,975,878 - -1.9
2,975,900 - -0.5
2,975,974 + -0.3
2,976,073 + Dshi_2819 0.21 +0.1
2,976,084 + Dshi_2819 0.25 +1.1
2,976,171 - Dshi_2819 0.56 -0.0
2,976,188 + Dshi_2819 0.62 +3.1
2,976,233 + Dshi_2819 0.78 +0.4
2,976,295 + -0.9
2,976,302 + -0.5
2,976,355 - +2.7
2,976,457 + -1.2
2,976,457 + +1.1
2,976,516 - -2.0
2,976,522 - Dshi_2820 0.10 +1.4
2,976,559 + Dshi_2820 0.13 +1.1
2,976,559 + Dshi_2820 0.13 +1.1
2,976,559 + Dshi_2820 0.13 -2.1
2,976,600 + Dshi_2820 0.16 -3.0
2,976,662 + Dshi_2820 0.20 +3.1
2,976,670 - Dshi_2820 0.21 -0.4
2,976,734 + Dshi_2820 0.26 -1.1
2,976,789 + Dshi_2820 0.30 +1.6
2,976,789 + Dshi_2820 0.30 -1.8
2,976,797 - Dshi_2820 0.30 +1.6
2,976,878 + Dshi_2820 0.36 +1.1
2,976,931 + Dshi_2820 0.40 -2.9
2,976,943 - Dshi_2820 0.41 -1.6
2,976,955 + Dshi_2820 0.42 +1.1
2,977,028 - Dshi_2820 0.47 -2.7
2,977,067 + Dshi_2820 0.50 +2.1
2,977,079 + Dshi_2820 0.50 +1.1
2,977,187 + Dshi_2820 0.58 -0.3

Or see this region's nucleotide sequence