Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2798

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2797 and Dshi_2798 overlap by 4 nucleotidesDshi_2798 and Dshi_2799 are separated by 120 nucleotides Dshi_2797: Dshi_2797 - Fructokinase (EC 2.7.1.4) (from data), at 2,955,983 to 2,956,909 _2797 Dshi_2798: Dshi_2798 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 2,956,906 to 2,957,343 _2798 Dshi_2799: Dshi_2799 - Flavocytochrome c sulphide dehydrogenase flavin-binding (RefSeq), at 2,957,464 to 2,958,732 _2799 Position (kb) 2956 2957 2958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2955.972 kb on - strandat 2956.091 kb on - strand, within Dshi_2797at 2956.115 kb on + strand, within Dshi_2797at 2956.187 kb on + strand, within Dshi_2797at 2956.350 kb on - strand, within Dshi_2797at 2956.555 kb on - strand, within Dshi_2797at 2956.555 kb on - strand, within Dshi_2797at 2956.573 kb on - strand, within Dshi_2797at 2956.616 kb on + strand, within Dshi_2797at 2956.725 kb on - strand, within Dshi_2797at 2956.823 kb on + strandat 2956.834 kb on - strandat 2956.856 kb on + strandat 2956.976 kb on + strand, within Dshi_2798at 2956.984 kb on - strand, within Dshi_2798at 2957.304 kb on + strandat 2957.530 kb on - strandat 2957.613 kb on + strand, within Dshi_2799at 2957.621 kb on - strand, within Dshi_2799at 2957.640 kb on - strand, within Dshi_2799at 2957.717 kb on + strand, within Dshi_2799at 2958.028 kb on + strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.178 kb on - strand, within Dshi_2799at 2958.215 kb on + strand, within Dshi_2799

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,955,972 - -4.1
2,956,091 - Dshi_2797 0.12 -0.1
2,956,115 + Dshi_2797 0.14 -1.5
2,956,187 + Dshi_2797 0.22 -0.1
2,956,350 - Dshi_2797 0.40 +3.4
2,956,555 - Dshi_2797 0.62 +0.1
2,956,555 - Dshi_2797 0.62 -0.6
2,956,573 - Dshi_2797 0.64 +1.0
2,956,616 + Dshi_2797 0.68 +1.1
2,956,725 - Dshi_2797 0.80 +1.6
2,956,823 + -1.3
2,956,834 - +0.3
2,956,856 + -2.1
2,956,976 + Dshi_2798 0.16 -0.9
2,956,984 - Dshi_2798 0.18 +1.1
2,957,304 + -1.7
2,957,530 - -2.5
2,957,613 + Dshi_2799 0.12 +1.4
2,957,621 - Dshi_2799 0.12 +1.1
2,957,640 - Dshi_2799 0.14 -2.2
2,957,717 + Dshi_2799 0.20 +1.1
2,958,028 + Dshi_2799 0.44 -0.9
2,958,046 - Dshi_2799 0.46 +1.1
2,958,046 - Dshi_2799 0.46 -1.2
2,958,178 - Dshi_2799 0.56 -1.5
2,958,215 + Dshi_2799 0.59 -1.7

Or see this region's nucleotide sequence