Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2778

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2777 and Dshi_2778 are separated by 125 nucleotidesDshi_2778 and Dshi_2779 are separated by 179 nucleotidesDshi_2779 and Dshi_2780 are separated by 69 nucleotides Dshi_2777: Dshi_2777 - transcriptional regulator, LysR family (RefSeq), at 2,939,244 to 2,940,098 _2777 Dshi_2778: Dshi_2778 - hypothetical protein (RefSeq), at 2,940,224 to 2,940,442 _2778 Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344 _2779 Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887 _2780 Position (kb) 2940 2941Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2939.242 kb on + strandat 2939.260 kb on - strandat 2939.362 kb on - strand, within Dshi_2777at 2939.400 kb on + strand, within Dshi_2777at 2939.419 kb on - strand, within Dshi_2777at 2939.472 kb on - strand, within Dshi_2777at 2939.521 kb on - strand, within Dshi_2777at 2939.538 kb on - strand, within Dshi_2777at 2939.565 kb on + strand, within Dshi_2777at 2939.837 kb on - strand, within Dshi_2777at 2939.982 kb on - strand, within Dshi_2777at 2940.175 kb on - strandat 2940.244 kb on - strandat 2940.310 kb on - strand, within Dshi_2778at 2940.394 kb on - strand, within Dshi_2778at 2940.419 kb on - strand, within Dshi_2778at 2940.520 kb on + strandat 2940.533 kb on + strandat 2940.803 kb on - strand, within Dshi_2779at 2941.075 kb on + strand, within Dshi_2779at 2941.174 kb on + strand, within Dshi_2779

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,939,242 + -2.3
2,939,260 - -1.7
2,939,362 - Dshi_2777 0.14 +1.1
2,939,400 + Dshi_2777 0.18 +0.1
2,939,419 - Dshi_2777 0.20 -3.0
2,939,472 - Dshi_2777 0.27 -1.5
2,939,521 - Dshi_2777 0.32 +1.1
2,939,538 - Dshi_2777 0.34 +1.1
2,939,565 + Dshi_2777 0.38 -0.9
2,939,837 - Dshi_2777 0.69 +0.4
2,939,982 - Dshi_2777 0.86 -1.2
2,940,175 - +0.5
2,940,244 - +1.1
2,940,310 - Dshi_2778 0.39 -1.7
2,940,394 - Dshi_2778 0.78 -0.1
2,940,419 - Dshi_2778 0.89 -1.5
2,940,520 + +4.1
2,940,533 + +2.4
2,940,803 - Dshi_2779 0.25 -3.5
2,941,075 + Dshi_2779 0.63 +1.6
2,941,174 + Dshi_2779 0.76 +1.9

Or see this region's nucleotide sequence