Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2462 and Dshi_2463 overlap by 8 nucleotides Dshi_2463 and Dshi_2464 are separated by 217 nucleotides Dshi_2464 and Dshi_2465 are separated by 12 nucleotides Dshi_2465 and Dshi_2466 are separated by 23 nucleotides
Dshi_2462: Dshi_2462 - Rhs element Vgr protein (RefSeq), at 2,612,931 to 2,614,718
_2462
Dshi_2463: Dshi_2463 - hypothetical protein (RefSeq), at 2,614,711 to 2,615,373
_2463
Dshi_2464: Dshi_2464 - conserved hypothetical phage tail protein (RefSeq), at 2,615,591 to 2,616,073
_2464
Dshi_2465: Dshi_2465 - conserved hypothetical phage tail protein (RefSeq), at 2,616,086 to 2,616,544
_2465
Dshi_2466: Dshi_2466 - hypothetical protein (RefSeq), at 2,616,568 to 2,618,061
_2466
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2614.657 kb on + strand at 2614.662 kb on + strand at 2614.677 kb on + strand at 2614.823 kb on - strand, within Dshi_2463 at 2614.825 kb on + strand, within Dshi_2463 at 2614.826 kb on + strand, within Dshi_2463 at 2614.833 kb on - strand, within Dshi_2463 at 2614.833 kb on - strand, within Dshi_2463 at 2614.843 kb on - strand, within Dshi_2463 at 2614.918 kb on + strand, within Dshi_2463 at 2615.009 kb on - strand, within Dshi_2463 at 2615.010 kb on + strand, within Dshi_2463 at 2615.018 kb on - strand, within Dshi_2463 at 2615.057 kb on + strand, within Dshi_2463 at 2615.065 kb on - strand, within Dshi_2463 at 2615.075 kb on - strand, within Dshi_2463 at 2615.242 kb on - strand, within Dshi_2463 at 2615.293 kb on - strand, within Dshi_2463 at 2615.293 kb on - strand, within Dshi_2463 at 2615.410 kb on - strand at 2615.486 kb on + strand at 2615.486 kb on + strand at 2615.494 kb on - strand at 2615.510 kb on + strand at 2615.566 kb on - strand at 2615.583 kb on - strand at 2615.613 kb on + strand at 2615.652 kb on - strand, within Dshi_2464 at 2615.687 kb on - strand, within Dshi_2464 at 2615.719 kb on - strand, within Dshi_2464 at 2615.762 kb on - strand, within Dshi_2464 at 2615.767 kb on - strand, within Dshi_2464 at 2615.776 kb on + strand, within Dshi_2464 at 2615.784 kb on + strand, within Dshi_2464 at 2615.828 kb on - strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.958 kb on + strand, within Dshi_2464 at 2615.966 kb on - strand, within Dshi_2464 at 2615.975 kb on + strand, within Dshi_2464 at 2616.013 kb on - strand, within Dshi_2464 at 2616.047 kb on - strand at 2616.136 kb on - strand, within Dshi_2465 at 2616.156 kb on + strand, within Dshi_2465 at 2616.164 kb on - strand, within Dshi_2465 at 2616.191 kb on + strand, within Dshi_2465 at 2616.250 kb on - strand, within Dshi_2465 at 2616.267 kb on + strand, within Dshi_2465 at 2616.284 kb on - strand, within Dshi_2465 at 2616.286 kb on + strand, within Dshi_2465 at 2616.286 kb on + strand, within Dshi_2465 at 2616.294 kb on - strand, within Dshi_2465 at 2616.294 kb on - strand, within Dshi_2465 at 2616.562 kb on - strand at 2616.641 kb on - strand at 2616.641 kb on - strand at 2616.646 kb on - strand at 2616.677 kb on + strand at 2616.688 kb on + strand at 2616.695 kb on - strand at 2616.789 kb on - strand, within Dshi_2466 at 2616.794 kb on + strand, within Dshi_2466 at 2616.815 kb on + strand, within Dshi_2466 at 2616.901 kb on - strand, within Dshi_2466 at 2616.929 kb on + strand, within Dshi_2466 at 2616.929 kb on + strand, within Dshi_2466 at 2616.937 kb on - strand, within Dshi_2466 at 2616.942 kb on - strand, within Dshi_2466 at 2616.942 kb on - strand, within Dshi_2466 at 2616.962 kb on - strand, within Dshi_2466 at 2616.985 kb on + strand, within Dshi_2466 at 2616.996 kb on + strand, within Dshi_2466 at 2617.005 kb on - strand, within Dshi_2466 at 2617.024 kb on + strand, within Dshi_2466 at 2617.032 kb on - strand, within Dshi_2466
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 2,614,657 + +0.6 2,614,662 + -0.4 2,614,677 + +0.1 2,614,823 - Dshi_2463 0.17 +1.9 2,614,825 + Dshi_2463 0.17 -0.3 2,614,826 + Dshi_2463 0.17 +0.6 2,614,833 - Dshi_2463 0.18 -0.5 2,614,833 - Dshi_2463 0.18 -2.4 2,614,843 - Dshi_2463 0.20 +1.2 2,614,918 + Dshi_2463 0.31 -0.2 2,615,009 - Dshi_2463 0.45 -4.1 2,615,010 + Dshi_2463 0.45 -1.9 2,615,018 - Dshi_2463 0.46 -0.8 2,615,057 + Dshi_2463 0.52 +0.2 2,615,065 - Dshi_2463 0.53 -2.4 2,615,075 - Dshi_2463 0.55 -0.4 2,615,242 - Dshi_2463 0.80 -1.4 2,615,293 - Dshi_2463 0.88 +0.8 2,615,293 - Dshi_2463 0.88 +1.8 2,615,410 - +1.1 2,615,486 + -1.7 2,615,486 + -0.7 2,615,494 - -0.1 2,615,510 + +0.0 2,615,566 - +1.0 2,615,583 - -1.8 2,615,613 + +0.8 2,615,652 - Dshi_2464 0.13 -0.2 2,615,687 - Dshi_2464 0.20 -2.1 2,615,719 - Dshi_2464 0.27 +1.1 2,615,762 - Dshi_2464 0.35 -2.0 2,615,767 - Dshi_2464 0.36 -0.1 2,615,776 + Dshi_2464 0.38 -0.2 2,615,784 + Dshi_2464 0.40 +0.8 2,615,828 - Dshi_2464 0.49 -0.0 2,615,958 + Dshi_2464 0.76 -2.2 2,615,958 + Dshi_2464 0.76 -0.6 2,615,958 + Dshi_2464 0.76 -0.8 2,615,958 + Dshi_2464 0.76 -2.4 2,615,966 - Dshi_2464 0.78 -1.2 2,615,975 + Dshi_2464 0.80 +1.8 2,616,013 - Dshi_2464 0.87 -1.0 2,616,047 - -0.3 2,616,136 - Dshi_2465 0.11 +0.4 2,616,156 + Dshi_2465 0.15 -0.8 2,616,164 - Dshi_2465 0.17 +0.8 2,616,191 + Dshi_2465 0.23 -0.1 2,616,250 - Dshi_2465 0.36 +0.8 2,616,267 + Dshi_2465 0.39 +1.2 2,616,284 - Dshi_2465 0.43 -0.1 2,616,286 + Dshi_2465 0.44 -1.4 2,616,286 + Dshi_2465 0.44 +0.4 2,616,294 - Dshi_2465 0.45 -2.8 2,616,294 - Dshi_2465 0.45 +1.2 2,616,562 - -1.6 2,616,641 - -0.9 2,616,641 - +0.5 2,616,646 - -0.8 2,616,677 + +3.8 2,616,688 + +0.6 2,616,695 - +0.8 2,616,789 - Dshi_2466 0.15 +4.5 2,616,794 + Dshi_2466 0.15 -2.6 2,616,815 + Dshi_2466 0.17 +1.1 2,616,901 - Dshi_2466 0.22 -1.5 2,616,929 + Dshi_2466 0.24 +3.1 2,616,929 + Dshi_2466 0.24 +3.3 2,616,937 - Dshi_2466 0.25 -1.6 2,616,942 - Dshi_2466 0.25 -3.2 2,616,942 - Dshi_2466 0.25 -3.1 2,616,962 - Dshi_2466 0.26 -4.5 2,616,985 + Dshi_2466 0.28 -1.6 2,616,996 + Dshi_2466 0.29 -0.0 2,617,005 - Dshi_2466 0.29 +1.7 2,617,024 + Dshi_2466 0.31 +0.8 2,617,032 - Dshi_2466 0.31 -0.7
Or see this region's nucleotide sequence