Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2454

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2453 and Dshi_2454 are separated by 43 nucleotidesDshi_2454 and Dshi_2455 overlap by 4 nucleotides Dshi_2453: Dshi_2453 - hypothetical protein (RefSeq), at 2,597,049 to 2,598,080 _2453 Dshi_2454: Dshi_2454 - hypothetical protein (RefSeq), at 2,598,124 to 2,598,690 _2454 Dshi_2455: Dshi_2455 - AAA ATPase central domain protein (RefSeq), at 2,598,687 to 2,600,012 _2455 Position (kb) 2598 2599Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2597.127 kb on - strandat 2597.183 kb on - strand, within Dshi_2453at 2597.241 kb on + strand, within Dshi_2453at 2597.241 kb on + strand, within Dshi_2453at 2597.284 kb on + strand, within Dshi_2453at 2597.455 kb on - strand, within Dshi_2453at 2597.521 kb on + strand, within Dshi_2453at 2597.686 kb on + strand, within Dshi_2453at 2597.835 kb on + strand, within Dshi_2453at 2597.835 kb on + strand, within Dshi_2453at 2597.846 kb on + strand, within Dshi_2453at 2597.854 kb on - strand, within Dshi_2453at 2597.856 kb on + strand, within Dshi_2453at 2597.927 kb on + strand, within Dshi_2453at 2597.990 kb on + strandat 2598.017 kb on + strandat 2598.070 kb on - strandat 2598.193 kb on + strand, within Dshi_2454at 2598.242 kb on + strand, within Dshi_2454at 2598.250 kb on - strand, within Dshi_2454at 2598.316 kb on + strand, within Dshi_2454at 2598.324 kb on - strand, within Dshi_2454at 2598.335 kb on + strand, within Dshi_2454at 2598.357 kb on - strand, within Dshi_2454at 2598.367 kb on - strand, within Dshi_2454at 2598.389 kb on - strand, within Dshi_2454at 2598.480 kb on + strand, within Dshi_2454at 2598.524 kb on - strand, within Dshi_2454at 2598.650 kb on - strandat 2598.654 kb on + strandat 2598.795 kb on - strandat 2598.869 kb on + strand, within Dshi_2455at 2599.001 kb on + strand, within Dshi_2455at 2599.059 kb on - strand, within Dshi_2455at 2599.061 kb on + strand, within Dshi_2455at 2599.145 kb on - strand, within Dshi_2455at 2599.164 kb on - strand, within Dshi_2455at 2599.227 kb on - strand, within Dshi_2455at 2599.242 kb on - strand, within Dshi_2455at 2599.295 kb on + strand, within Dshi_2455at 2599.375 kb on - strand, within Dshi_2455at 2599.375 kb on - strand, within Dshi_2455at 2599.384 kb on + strand, within Dshi_2455at 2599.384 kb on + strand, within Dshi_2455at 2599.400 kb on + strand, within Dshi_2455at 2599.456 kb on + strand, within Dshi_2455at 2599.507 kb on - strand, within Dshi_2455at 2599.545 kb on + strand, within Dshi_2455at 2599.552 kb on - strand, within Dshi_2455at 2599.553 kb on - strand, within Dshi_2455at 2599.562 kb on + strand, within Dshi_2455at 2599.572 kb on - strand, within Dshi_2455at 2599.596 kb on - strand, within Dshi_2455

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,597,127 - -2.7
2,597,183 - Dshi_2453 0.13 -0.2
2,597,241 + Dshi_2453 0.19 +0.8
2,597,241 + Dshi_2453 0.19 +0.8
2,597,284 + Dshi_2453 0.23 +1.0
2,597,455 - Dshi_2453 0.39 -0.9
2,597,521 + Dshi_2453 0.46 -0.8
2,597,686 + Dshi_2453 0.62 -2.4
2,597,835 + Dshi_2453 0.76 -1.6
2,597,835 + Dshi_2453 0.76 +1.5
2,597,846 + Dshi_2453 0.77 -2.4
2,597,854 - Dshi_2453 0.78 +1.8
2,597,856 + Dshi_2453 0.78 +1.8
2,597,927 + Dshi_2453 0.85 -1.8
2,597,990 + +0.8
2,598,017 + -1.5
2,598,070 - -0.8
2,598,193 + Dshi_2454 0.12 +0.1
2,598,242 + Dshi_2454 0.21 -4.0
2,598,250 - Dshi_2454 0.22 -0.8
2,598,316 + Dshi_2454 0.34 -2.0
2,598,324 - Dshi_2454 0.35 -2.2
2,598,335 + Dshi_2454 0.37 +0.8
2,598,357 - Dshi_2454 0.41 -2.3
2,598,367 - Dshi_2454 0.43 -1.2
2,598,389 - Dshi_2454 0.47 -0.7
2,598,480 + Dshi_2454 0.63 -0.2
2,598,524 - Dshi_2454 0.71 +3.3
2,598,650 - +0.8
2,598,654 + +3.3
2,598,795 - +1.1
2,598,869 + Dshi_2455 0.14 -1.2
2,599,001 + Dshi_2455 0.24 -1.2
2,599,059 - Dshi_2455 0.28 +0.6
2,599,061 + Dshi_2455 0.28 -0.2
2,599,145 - Dshi_2455 0.35 -0.8
2,599,164 - Dshi_2455 0.36 +1.5
2,599,227 - Dshi_2455 0.41 -2.6
2,599,242 - Dshi_2455 0.42 +1.8
2,599,295 + Dshi_2455 0.46 +0.8
2,599,375 - Dshi_2455 0.52 -2.7
2,599,375 - Dshi_2455 0.52 +3.6
2,599,384 + Dshi_2455 0.53 +0.8
2,599,384 + Dshi_2455 0.53 +0.8
2,599,400 + Dshi_2455 0.54 +0.8
2,599,456 + Dshi_2455 0.58 +0.8
2,599,507 - Dshi_2455 0.62 +3.1
2,599,545 + Dshi_2455 0.65 -0.2
2,599,552 - Dshi_2455 0.65 +0.8
2,599,553 - Dshi_2455 0.65 -0.4
2,599,562 + Dshi_2455 0.66 -0.2
2,599,572 - Dshi_2455 0.67 +0.8
2,599,596 - Dshi_2455 0.69 -1.6

Or see this region's nucleotide sequence