Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2286

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2285 and Dshi_2286 are separated by 301 nucleotidesDshi_2286 and Dshi_2287 overlap by 4 nucleotides Dshi_2285: Dshi_2285 - hypothetical protein (RefSeq), at 2,413,857 to 2,414,513 _2285 Dshi_2286: Dshi_2286 - transcriptional regulator, MarR family (RefSeq), at 2,414,815 to 2,415,318 _2286 Dshi_2287: Dshi_2287 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 2,415,315 to 2,417,234 _2287 Position (kb) 2414 2415 2416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2413.835 kb on + strandat 2413.839 kb on + strandat 2413.889 kb on + strandat 2413.913 kb on + strandat 2413.946 kb on - strand, within Dshi_2285at 2413.982 kb on - strand, within Dshi_2285at 2413.984 kb on + strand, within Dshi_2285at 2413.992 kb on - strand, within Dshi_2285at 2413.992 kb on - strand, within Dshi_2285at 2413.992 kb on - strand, within Dshi_2285at 2414.011 kb on - strand, within Dshi_2285at 2414.035 kb on + strand, within Dshi_2285at 2414.132 kb on + strand, within Dshi_2285at 2414.135 kb on - strand, within Dshi_2285at 2414.153 kb on - strand, within Dshi_2285at 2414.214 kb on + strand, within Dshi_2285at 2414.245 kb on - strand, within Dshi_2285at 2414.262 kb on - strand, within Dshi_2285at 2414.299 kb on - strand, within Dshi_2285at 2414.326 kb on + strand, within Dshi_2285at 2414.366 kb on - strand, within Dshi_2285at 2414.368 kb on + strand, within Dshi_2285at 2414.376 kb on - strand, within Dshi_2285at 2414.417 kb on + strand, within Dshi_2285at 2414.495 kb on + strandat 2414.497 kb on - strandat 2414.504 kb on - strandat 2414.529 kb on - strandat 2414.552 kb on - strandat 2414.583 kb on - strandat 2414.739 kb on - strandat 2414.744 kb on - strandat 2414.821 kb on - strandat 2414.856 kb on + strandat 2414.871 kb on - strand, within Dshi_2286at 2414.912 kb on - strand, within Dshi_2286at 2414.933 kb on - strand, within Dshi_2286at 2414.951 kb on + strand, within Dshi_2286at 2415.013 kb on - strand, within Dshi_2286at 2415.013 kb on - strand, within Dshi_2286at 2415.017 kb on + strand, within Dshi_2286at 2415.017 kb on + strand, within Dshi_2286at 2415.036 kb on + strand, within Dshi_2286at 2415.054 kb on - strand, within Dshi_2286at 2415.055 kb on - strand, within Dshi_2286at 2415.091 kb on + strand, within Dshi_2286at 2415.145 kb on - strand, within Dshi_2286at 2415.167 kb on - strand, within Dshi_2286at 2415.183 kb on - strand, within Dshi_2286at 2415.186 kb on + strand, within Dshi_2286at 2415.269 kb on - strandat 2415.289 kb on - strandat 2415.294 kb on - strandat 2415.370 kb on + strandat 2415.378 kb on - strandat 2415.457 kb on - strandat 2415.477 kb on + strandat 2415.535 kb on + strand, within Dshi_2287at 2415.535 kb on + strand, within Dshi_2287at 2415.553 kb on - strand, within Dshi_2287at 2415.564 kb on + strand, within Dshi_2287at 2415.571 kb on + strand, within Dshi_2287at 2415.576 kb on + strand, within Dshi_2287at 2415.591 kb on + strand, within Dshi_2287at 2415.647 kb on - strand, within Dshi_2287at 2415.689 kb on - strand, within Dshi_2287at 2415.714 kb on + strand, within Dshi_2287at 2415.731 kb on - strand, within Dshi_2287at 2415.739 kb on + strand, within Dshi_2287at 2415.739 kb on + strand, within Dshi_2287at 2415.739 kb on + strand, within Dshi_2287at 2415.757 kb on - strand, within Dshi_2287at 2415.893 kb on - strand, within Dshi_2287at 2416.163 kb on - strand, within Dshi_2287at 2416.184 kb on + strand, within Dshi_2287at 2416.215 kb on - strand, within Dshi_2287at 2416.253 kb on + strand, within Dshi_2287at 2416.253 kb on + strand, within Dshi_2287at 2416.253 kb on + strand, within Dshi_2287at 2416.253 kb on + strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.261 kb on - strand, within Dshi_2287at 2416.266 kb on - strand, within Dshi_2287at 2416.314 kb on - strand, within Dshi_2287

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,413,835 + -2.9
2,413,839 + +1.4
2,413,889 + +0.4
2,413,913 + +3.0
2,413,946 - Dshi_2285 0.14 -0.4
2,413,982 - Dshi_2285 0.19 +1.0
2,413,984 + Dshi_2285 0.19 -0.3
2,413,992 - Dshi_2285 0.21 -0.4
2,413,992 - Dshi_2285 0.21 -1.4
2,413,992 - Dshi_2285 0.21 +0.7
2,414,011 - Dshi_2285 0.23 +1.1
2,414,035 + Dshi_2285 0.27 +0.5
2,414,132 + Dshi_2285 0.42 +0.3
2,414,135 - Dshi_2285 0.42 -1.0
2,414,153 - Dshi_2285 0.45 +3.0
2,414,214 + Dshi_2285 0.54 +0.1
2,414,245 - Dshi_2285 0.59 +0.1
2,414,262 - Dshi_2285 0.62 +0.4
2,414,299 - Dshi_2285 0.67 -0.8
2,414,326 + Dshi_2285 0.71 +0.4
2,414,366 - Dshi_2285 0.77 -1.2
2,414,368 + Dshi_2285 0.78 +1.1
2,414,376 - Dshi_2285 0.79 -0.4
2,414,417 + Dshi_2285 0.85 +0.5
2,414,495 + +0.2
2,414,497 - +0.7
2,414,504 - +2.1
2,414,529 - -0.2
2,414,552 - -0.1
2,414,583 - -0.5
2,414,739 - -0.1
2,414,744 - -0.1
2,414,821 - +0.1
2,414,856 + -1.6
2,414,871 - Dshi_2286 0.11 +1.4
2,414,912 - Dshi_2286 0.19 +0.3
2,414,933 - Dshi_2286 0.23 -1.2
2,414,951 + Dshi_2286 0.27 -1.3
2,415,013 - Dshi_2286 0.39 +0.7
2,415,013 - Dshi_2286 0.39 -0.7
2,415,017 + Dshi_2286 0.40 -2.5
2,415,017 + Dshi_2286 0.40 -0.1
2,415,036 + Dshi_2286 0.44 -1.9
2,415,054 - Dshi_2286 0.47 +0.1
2,415,055 - Dshi_2286 0.48 -0.1
2,415,091 + Dshi_2286 0.55 -0.5
2,415,145 - Dshi_2286 0.65 -0.7
2,415,167 - Dshi_2286 0.70 +1.0
2,415,183 - Dshi_2286 0.73 +0.1
2,415,186 + Dshi_2286 0.74 +0.7
2,415,269 - -0.9
2,415,289 - +0.5
2,415,294 - +0.6
2,415,370 + +1.6
2,415,378 - -2.5
2,415,457 - +0.1
2,415,477 + -0.6
2,415,535 + Dshi_2287 0.11 -0.1
2,415,535 + Dshi_2287 0.11 +3.0
2,415,553 - Dshi_2287 0.12 +1.6
2,415,564 + Dshi_2287 0.13 +1.2
2,415,571 + Dshi_2287 0.13 -0.3
2,415,576 + Dshi_2287 0.14 +1.5
2,415,591 + Dshi_2287 0.14 +0.7
2,415,647 - Dshi_2287 0.17 +0.1
2,415,689 - Dshi_2287 0.19 +3.0
2,415,714 + Dshi_2287 0.21 -1.3
2,415,731 - Dshi_2287 0.22 -0.1
2,415,739 + Dshi_2287 0.22 +0.2
2,415,739 + Dshi_2287 0.22 +1.1
2,415,739 + Dshi_2287 0.22 +0.2
2,415,757 - Dshi_2287 0.23 +0.5
2,415,893 - Dshi_2287 0.30 +2.3
2,416,163 - Dshi_2287 0.44 +1.0
2,416,184 + Dshi_2287 0.45 +3.5
2,416,215 - Dshi_2287 0.47 +0.1
2,416,253 + Dshi_2287 0.49 +0.2
2,416,253 + Dshi_2287 0.49 -1.2
2,416,253 + Dshi_2287 0.49 +1.1
2,416,253 + Dshi_2287 0.49 +0.4
2,416,261 - Dshi_2287 0.49 +1.5
2,416,261 - Dshi_2287 0.49 +3.3
2,416,261 - Dshi_2287 0.49 +0.4
2,416,261 - Dshi_2287 0.49 +0.6
2,416,261 - Dshi_2287 0.49 +3.3
2,416,261 - Dshi_2287 0.49 +0.4
2,416,266 - Dshi_2287 0.50 -0.2
2,416,314 - Dshi_2287 0.52 -0.2

Or see this region's nucleotide sequence