Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2267 and Dshi_2268 overlap by 4 nucleotides Dshi_2268 and Dshi_2269 are separated by 9 nucleotides Dshi_2269 and Dshi_2270 overlap by 4 nucleotides Dshi_2270 and Dshi_2271 overlap by 1 nucleotides
Dshi_2267: Dshi_2267 - hypothetical protein (RefSeq), at 2,391,484 to 2,393,145
_2267
Dshi_2268: Dshi_2268 - TadE family protein (RefSeq), at 2,393,142 to 2,393,666
_2268
Dshi_2269: Dshi_2269 - hypothetical protein (RefSeq), at 2,393,676 to 2,394,230
_2269
Dshi_2270: Dshi_2270 - hypothetical protein (RefSeq), at 2,394,227 to 2,394,736
_2270
Dshi_2271: Dshi_2271 - transcriptional regulator, TetR family (RefSeq), at 2,394,736 to 2,395,365
_2271
Position (kb)
2393
2394
2395 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2392.713 kb on - strand, within Dshi_2267 at 2392.715 kb on + strand, within Dshi_2267 at 2392.745 kb on + strand, within Dshi_2267 at 2392.755 kb on + strand, within Dshi_2267 at 2392.772 kb on - strand, within Dshi_2267 at 2392.787 kb on - strand, within Dshi_2267 at 2392.837 kb on + strand, within Dshi_2267 at 2392.845 kb on - strand, within Dshi_2267 at 2392.858 kb on + strand, within Dshi_2267 at 2392.872 kb on + strand, within Dshi_2267 at 2392.903 kb on + strand, within Dshi_2267 at 2392.904 kb on - strand, within Dshi_2267 at 2392.911 kb on - strand, within Dshi_2267 at 2392.913 kb on + strand, within Dshi_2267 at 2392.914 kb on - strand, within Dshi_2267 at 2392.919 kb on - strand, within Dshi_2267 at 2392.922 kb on - strand, within Dshi_2267 at 2392.924 kb on - strand, within Dshi_2267 at 2392.926 kb on + strand, within Dshi_2267 at 2392.948 kb on + strand, within Dshi_2267 at 2392.997 kb on - strand at 2393.008 kb on - strand at 2393.021 kb on + strand at 2393.039 kb on + strand at 2393.073 kb on + strand at 2393.153 kb on - strand at 2393.178 kb on - strand at 2393.188 kb on + strand at 2393.245 kb on + strand, within Dshi_2268 at 2393.305 kb on - strand, within Dshi_2268 at 2393.337 kb on + strand, within Dshi_2268 at 2393.345 kb on - strand, within Dshi_2268 at 2393.345 kb on - strand, within Dshi_2268 at 2393.347 kb on + strand, within Dshi_2268 at 2393.382 kb on - strand, within Dshi_2268 at 2393.450 kb on - strand, within Dshi_2268 at 2393.494 kb on - strand, within Dshi_2268 at 2393.502 kb on + strand, within Dshi_2268 at 2393.509 kb on + strand, within Dshi_2268 at 2393.513 kb on + strand, within Dshi_2268 at 2393.531 kb on - strand, within Dshi_2268 at 2393.549 kb on + strand, within Dshi_2268 at 2393.549 kb on + strand, within Dshi_2268 at 2393.557 kb on - strand, within Dshi_2268 at 2393.557 kb on - strand, within Dshi_2268 at 2393.565 kb on + strand, within Dshi_2268 at 2393.567 kb on + strand, within Dshi_2268 at 2393.586 kb on + strand, within Dshi_2268 at 2393.586 kb on + strand, within Dshi_2268 at 2393.594 kb on - strand, within Dshi_2268 at 2393.594 kb on - strand, within Dshi_2268 at 2393.611 kb on - strand, within Dshi_2268 at 2393.738 kb on - strand, within Dshi_2269 at 2393.762 kb on + strand, within Dshi_2269 at 2393.770 kb on - strand, within Dshi_2269 at 2393.784 kb on + strand, within Dshi_2269 at 2393.799 kb on - strand, within Dshi_2269 at 2393.801 kb on + strand, within Dshi_2269 at 2393.809 kb on + strand, within Dshi_2269 at 2393.809 kb on - strand, within Dshi_2269 at 2393.850 kb on + strand, within Dshi_2269 at 2393.853 kb on - strand, within Dshi_2269 at 2393.947 kb on + strand, within Dshi_2269 at 2393.952 kb on + strand, within Dshi_2269 at 2393.952 kb on + strand, within Dshi_2269 at 2393.955 kb on - strand, within Dshi_2269 at 2393.957 kb on + strand, within Dshi_2269 at 2393.960 kb on - strand, within Dshi_2269 at 2394.005 kb on + strand, within Dshi_2269 at 2394.010 kb on + strand, within Dshi_2269 at 2394.010 kb on + strand, within Dshi_2269 at 2394.013 kb on - strand, within Dshi_2269 at 2394.018 kb on - strand, within Dshi_2269 at 2394.032 kb on - strand, within Dshi_2269 at 2394.036 kb on + strand, within Dshi_2269 at 2394.046 kb on + strand, within Dshi_2269 at 2394.054 kb on - strand, within Dshi_2269 at 2394.130 kb on + strand, within Dshi_2269 at 2394.223 kb on - strand at 2394.225 kb on + strand at 2394.226 kb on - strand at 2394.233 kb on - strand at 2394.252 kb on - strand at 2394.272 kb on + strand at 2394.281 kb on + strand, within Dshi_2270 at 2394.338 kb on - strand, within Dshi_2270 at 2394.364 kb on - strand, within Dshi_2270 at 2394.383 kb on - strand, within Dshi_2270 at 2394.423 kb on - strand, within Dshi_2270 at 2394.460 kb on - strand, within Dshi_2270 at 2394.493 kb on + strand, within Dshi_2270 at 2394.524 kb on - strand, within Dshi_2270 at 2394.529 kb on - strand, within Dshi_2270 at 2394.573 kb on + strand, within Dshi_2270 at 2394.633 kb on - strand, within Dshi_2270 at 2394.691 kb on + strand at 2394.704 kb on - strand at 2394.729 kb on - strand at 2394.729 kb on - strand at 2394.729 kb on - strand at 2394.809 kb on + strand, within Dshi_2271 at 2394.904 kb on - strand, within Dshi_2271 at 2394.970 kb on + strand, within Dshi_2271 at 2395.017 kb on + strand, within Dshi_2271 at 2395.025 kb on - strand, within Dshi_2271 at 2395.030 kb on - strand, within Dshi_2271 at 2395.040 kb on - strand, within Dshi_2271 at 2395.053 kb on - strand, within Dshi_2271 at 2395.131 kb on - strand, within Dshi_2271 at 2395.136 kb on + strand, within Dshi_2271 at 2395.164 kb on - strand, within Dshi_2271 at 2395.173 kb on - strand, within Dshi_2271 at 2395.208 kb on - strand, within Dshi_2271 at 2395.219 kb on - strand, within Dshi_2271
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 2,392,713 - Dshi_2267 0.74 -0.3 2,392,715 + Dshi_2267 0.74 +0.4 2,392,745 + Dshi_2267 0.76 +0.8 2,392,755 + Dshi_2267 0.76 -0.2 2,392,772 - Dshi_2267 0.77 -0.1 2,392,787 - Dshi_2267 0.78 +0.4 2,392,837 + Dshi_2267 0.81 +1.5 2,392,845 - Dshi_2267 0.82 +0.4 2,392,858 + Dshi_2267 0.83 -2.1 2,392,872 + Dshi_2267 0.84 +0.1 2,392,903 + Dshi_2267 0.85 -0.1 2,392,904 - Dshi_2267 0.85 +0.4 2,392,911 - Dshi_2267 0.86 +0.1 2,392,913 + Dshi_2267 0.86 +1.2 2,392,914 - Dshi_2267 0.86 -3.2 2,392,919 - Dshi_2267 0.86 -0.8 2,392,922 - Dshi_2267 0.87 +0.4 2,392,924 - Dshi_2267 0.87 -0.0 2,392,926 + Dshi_2267 0.87 -0.5 2,392,948 + Dshi_2267 0.88 +0.2 2,392,997 - +0.1 2,393,008 - +2.3 2,393,021 + +0.3 2,393,039 + -1.6 2,393,073 + -0.9 2,393,153 - -0.6 2,393,178 - -0.1 2,393,188 + -0.5 2,393,245 + Dshi_2268 0.20 +0.5 2,393,305 - Dshi_2268 0.31 +0.2 2,393,337 + Dshi_2268 0.37 -0.3 2,393,345 - Dshi_2268 0.39 -0.8 2,393,345 - Dshi_2268 0.39 -0.8 2,393,347 + Dshi_2268 0.39 +2.7 2,393,382 - Dshi_2268 0.46 +3.6 2,393,450 - Dshi_2268 0.59 -1.1 2,393,494 - Dshi_2268 0.67 +0.1 2,393,502 + Dshi_2268 0.69 -3.6 2,393,509 + Dshi_2268 0.70 -2.1 2,393,513 + Dshi_2268 0.71 -0.7 2,393,531 - Dshi_2268 0.74 -0.4 2,393,549 + Dshi_2268 0.78 +0.7 2,393,549 + Dshi_2268 0.78 +0.7 2,393,557 - Dshi_2268 0.79 -0.2 2,393,557 - Dshi_2268 0.79 +0.9 2,393,565 + Dshi_2268 0.81 -0.4 2,393,567 + Dshi_2268 0.81 +0.2 2,393,586 + Dshi_2268 0.85 +1.7 2,393,586 + Dshi_2268 0.85 +0.8 2,393,594 - Dshi_2268 0.86 +1.9 2,393,594 - Dshi_2268 0.86 +1.3 2,393,611 - Dshi_2268 0.89 -0.7 2,393,738 - Dshi_2269 0.11 -0.8 2,393,762 + Dshi_2269 0.15 -1.8 2,393,770 - Dshi_2269 0.17 +1.0 2,393,784 + Dshi_2269 0.19 +0.9 2,393,799 - Dshi_2269 0.22 +4.9 2,393,801 + Dshi_2269 0.23 +0.4 2,393,809 + Dshi_2269 0.24 -2.5 2,393,809 - Dshi_2269 0.24 +3.2 2,393,850 + Dshi_2269 0.31 +0.1 2,393,853 - Dshi_2269 0.32 +0.6 2,393,947 + Dshi_2269 0.49 -1.5 2,393,952 + Dshi_2269 0.50 +0.7 2,393,952 + Dshi_2269 0.50 -1.3 2,393,955 - Dshi_2269 0.50 +0.1 2,393,957 + Dshi_2269 0.51 +0.6 2,393,960 - Dshi_2269 0.51 +0.0 2,394,005 + Dshi_2269 0.59 +0.9 2,394,010 + Dshi_2269 0.60 -0.4 2,394,010 + Dshi_2269 0.60 +0.0 2,394,013 - Dshi_2269 0.61 -1.1 2,394,018 - Dshi_2269 0.62 +1.2 2,394,032 - Dshi_2269 0.64 -0.7 2,394,036 + Dshi_2269 0.65 +0.7 2,394,046 + Dshi_2269 0.67 +1.4 2,394,054 - Dshi_2269 0.68 +0.3 2,394,130 + Dshi_2269 0.82 +1.2 2,394,223 - +0.7 2,394,225 + -0.2 2,394,226 - +0.7 2,394,233 - -2.1 2,394,252 - -1.5 2,394,272 + +0.4 2,394,281 + Dshi_2270 0.11 -1.9 2,394,338 - Dshi_2270 0.22 -0.3 2,394,364 - Dshi_2270 0.27 -0.3 2,394,383 - Dshi_2270 0.31 +0.0 2,394,423 - Dshi_2270 0.38 +1.0 2,394,460 - Dshi_2270 0.46 -1.9 2,394,493 + Dshi_2270 0.52 +0.8 2,394,524 - Dshi_2270 0.58 +2.1 2,394,529 - Dshi_2270 0.59 -0.2 2,394,573 + Dshi_2270 0.68 -3.2 2,394,633 - Dshi_2270 0.80 -0.7 2,394,691 + -0.4 2,394,704 - -0.4 2,394,729 - +0.4 2,394,729 - -0.4 2,394,729 - -0.6 2,394,809 + Dshi_2271 0.12 +0.3 2,394,904 - Dshi_2271 0.27 -0.9 2,394,970 + Dshi_2271 0.37 -0.6 2,395,017 + Dshi_2271 0.45 -1.1 2,395,025 - Dshi_2271 0.46 -0.4 2,395,030 - Dshi_2271 0.47 +0.5 2,395,040 - Dshi_2271 0.48 +0.0 2,395,053 - Dshi_2271 0.50 +0.1 2,395,131 - Dshi_2271 0.63 +0.3 2,395,136 + Dshi_2271 0.63 -0.4 2,395,164 - Dshi_2271 0.68 -1.7 2,395,173 - Dshi_2271 0.69 +1.0 2,395,208 - Dshi_2271 0.75 +0.7 2,395,219 - Dshi_2271 0.77 +0.7
Or see this region's nucleotide sequence