Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2261 and Dshi_2262 are separated by 121 nucleotides Dshi_2262 and Dshi_2263 are separated by 55 nucleotides Dshi_2263 and Dshi_2264 overlap by 8 nucleotides
Dshi_2261: Dshi_2261 - RNA polymerase, sigma 70 subunit, RpoD family (RefSeq), at 2,381,601 to 2,383,595
_2261
Dshi_2262: Dshi_2262 - DNA primase (RefSeq), at 2,383,717 to 2,385,669
_2262
Dshi_2263: Dshi_2263 - sarcosine oxidase, gamma subunit, putative (RefSeq), at 2,385,725 to 2,386,303
_2263
Dshi_2264: Dshi_2264 - sarcosine oxidase, alpha subunit family (RefSeq), at 2,386,296 to 2,389,238
_2264
Position (kb)
2383
2384
2385
2386 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2383.689 kb on - strand at 2383.724 kb on - strand at 2385.779 kb on - strand at 2385.836 kb on + strand, within Dshi_2263 at 2385.847 kb on - strand, within Dshi_2263 at 2385.886 kb on + strand, within Dshi_2263 at 2385.900 kb on + strand, within Dshi_2263 at 2385.900 kb on + strand, within Dshi_2263 at 2385.908 kb on - strand, within Dshi_2263 at 2385.926 kb on - strand, within Dshi_2263 at 2385.931 kb on + strand, within Dshi_2263 at 2385.939 kb on + strand, within Dshi_2263 at 2386.037 kb on - strand, within Dshi_2263 at 2386.084 kb on - strand, within Dshi_2263 at 2386.086 kb on + strand, within Dshi_2263 at 2386.094 kb on - strand, within Dshi_2263 at 2386.094 kb on - strand, within Dshi_2263 at 2386.170 kb on - strand, within Dshi_2263 at 2386.191 kb on + strand, within Dshi_2263 at 2386.199 kb on - strand, within Dshi_2263 at 2386.199 kb on - strand, within Dshi_2263 at 2386.399 kb on - strand at 2386.407 kb on + strand at 2386.485 kb on - strand at 2386.490 kb on - strand at 2386.513 kb on - strand at 2386.526 kb on + strand at 2386.597 kb on - strand, within Dshi_2264 at 2386.599 kb on + strand, within Dshi_2264
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 2,383,689 - +0.1 2,383,724 - -1.9 2,385,779 - +1.9 2,385,836 + Dshi_2263 0.19 +0.3 2,385,847 - Dshi_2263 0.21 +2.0 2,385,886 + Dshi_2263 0.28 +1.7 2,385,900 + Dshi_2263 0.30 -1.8 2,385,900 + Dshi_2263 0.30 -1.6 2,385,908 - Dshi_2263 0.32 -0.4 2,385,926 - Dshi_2263 0.35 -0.5 2,385,931 + Dshi_2263 0.36 +2.6 2,385,939 + Dshi_2263 0.37 -1.4 2,386,037 - Dshi_2263 0.54 -0.5 2,386,084 - Dshi_2263 0.62 -0.2 2,386,086 + Dshi_2263 0.62 -1.5 2,386,094 - Dshi_2263 0.64 -1.3 2,386,094 - Dshi_2263 0.64 +1.1 2,386,170 - Dshi_2263 0.77 +0.7 2,386,191 + Dshi_2263 0.80 +0.3 2,386,199 - Dshi_2263 0.82 +1.5 2,386,199 - Dshi_2263 0.82 +0.7 2,386,399 - +0.6 2,386,407 + -1.0 2,386,485 - +0.3 2,386,490 - +1.3 2,386,513 - -2.5 2,386,526 + -0.1 2,386,597 - Dshi_2264 0.10 -0.4 2,386,599 + Dshi_2264 0.10 -0.4
Or see this region's nucleotide sequence