Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2076

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2074 and Dshi_2075 are separated by 99 nucleotidesDshi_2075 and Dshi_2076 are separated by 189 nucleotidesDshi_2076 and Dshi_2077 are separated by 55 nucleotides Dshi_2074: Dshi_2074 - adenine phosphoribosyltransferase (RefSeq), at 2,194,887 to 2,195,426 _2074 Dshi_2075: Dshi_2075 - protein of unknown function DUF302 (RefSeq), at 2,195,526 to 2,195,978 _2075 Dshi_2076: Dshi_2076 - FAD linked oxidase domain protein (RefSeq), at 2,196,168 to 2,197,586 _2076 Dshi_2077: Dshi_2077 - hypothetical protein (RefSeq), at 2,197,642 to 2,198,481 _2077 Position (kb) 2196 2197 2198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2195.176 kb on - strand, within Dshi_2074at 2195.314 kb on - strand, within Dshi_2074at 2195.327 kb on - strand, within Dshi_2074at 2195.380 kb on - strandat 2195.392 kb on - strandat 2195.407 kb on + strandat 2195.457 kb on + strandat 2195.535 kb on + strandat 2195.541 kb on - strandat 2195.631 kb on - strand, within Dshi_2075at 2195.649 kb on + strand, within Dshi_2075at 2195.649 kb on + strand, within Dshi_2075at 2195.673 kb on + strand, within Dshi_2075at 2195.714 kb on - strand, within Dshi_2075at 2195.768 kb on - strand, within Dshi_2075at 2195.778 kb on + strand, within Dshi_2075at 2195.781 kb on - strand, within Dshi_2075at 2196.010 kb on + strandat 2196.087 kb on + strandat 2197.593 kb on + strandat 2197.601 kb on - strandat 2197.663 kb on + strandat 2197.675 kb on + strandat 2197.753 kb on - strand, within Dshi_2077at 2197.794 kb on - strand, within Dshi_2077at 2197.843 kb on - strand, within Dshi_2077at 2197.843 kb on - strand, within Dshi_2077at 2197.853 kb on - strand, within Dshi_2077at 2197.869 kb on + strand, within Dshi_2077at 2197.888 kb on - strand, within Dshi_2077at 2197.956 kb on - strand, within Dshi_2077at 2197.957 kb on + strand, within Dshi_2077at 2197.967 kb on + strand, within Dshi_2077at 2197.970 kb on + strand, within Dshi_2077at 2197.970 kb on + strand, within Dshi_2077at 2197.970 kb on + strand, within Dshi_2077at 2197.978 kb on - strand, within Dshi_2077at 2198.008 kb on + strand, within Dshi_2077at 2198.008 kb on + strand, within Dshi_2077at 2198.029 kb on + strand, within Dshi_2077at 2198.041 kb on + strand, within Dshi_2077at 2198.090 kb on - strand, within Dshi_2077at 2198.090 kb on - strand, within Dshi_2077at 2198.111 kb on - strand, within Dshi_2077at 2198.151 kb on + strand, within Dshi_2077at 2198.151 kb on + strand, within Dshi_2077at 2198.151 kb on + strand, within Dshi_2077at 2198.159 kb on - strand, within Dshi_2077at 2198.173 kb on + strand, within Dshi_2077at 2198.219 kb on + strand, within Dshi_2077at 2198.322 kb on + strand, within Dshi_2077at 2198.328 kb on - strand, within Dshi_2077at 2198.342 kb on - strand, within Dshi_2077at 2198.495 kb on - strandat 2198.513 kb on + strandat 2198.516 kb on - strandat 2198.523 kb on + strandat 2198.526 kb on - strandat 2198.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,195,176 - Dshi_2074 0.54 +1.0
2,195,314 - Dshi_2074 0.79 -2.1
2,195,327 - Dshi_2074 0.81 +1.0
2,195,380 - -1.4
2,195,392 - -2.7
2,195,407 + -1.4
2,195,457 + -2.2
2,195,535 + -1.6
2,195,541 - +3.5
2,195,631 - Dshi_2075 0.23 +1.0
2,195,649 + Dshi_2075 0.27 -0.2
2,195,649 + Dshi_2075 0.27 +1.0
2,195,673 + Dshi_2075 0.32 -1.4
2,195,714 - Dshi_2075 0.42 -0.6
2,195,768 - Dshi_2075 0.53 -0.5
2,195,778 + Dshi_2075 0.56 +0.5
2,195,781 - Dshi_2075 0.56 +1.0
2,196,010 + +1.3
2,196,087 + +1.0
2,197,593 + -1.6
2,197,601 - -1.0
2,197,663 + +0.4
2,197,675 + +3.3
2,197,753 - Dshi_2077 0.13 +1.5
2,197,794 - Dshi_2077 0.18 -1.0
2,197,843 - Dshi_2077 0.24 -2.2
2,197,843 - Dshi_2077 0.24 -2.2
2,197,853 - Dshi_2077 0.25 +1.0
2,197,869 + Dshi_2077 0.27 -0.6
2,197,888 - Dshi_2077 0.29 +1.0
2,197,956 - Dshi_2077 0.37 +3.0
2,197,957 + Dshi_2077 0.38 -1.4
2,197,967 + Dshi_2077 0.39 -0.5
2,197,970 + Dshi_2077 0.39 -2.5
2,197,970 + Dshi_2077 0.39 +1.0
2,197,970 + Dshi_2077 0.39 -0.6
2,197,978 - Dshi_2077 0.40 -0.4
2,198,008 + Dshi_2077 0.44 +1.1
2,198,008 + Dshi_2077 0.44 -0.6
2,198,029 + Dshi_2077 0.46 +2.0
2,198,041 + Dshi_2077 0.47 +1.0
2,198,090 - Dshi_2077 0.53 +1.7
2,198,090 - Dshi_2077 0.53 +1.0
2,198,111 - Dshi_2077 0.56 +2.3
2,198,151 + Dshi_2077 0.61 -3.4
2,198,151 + Dshi_2077 0.61 -3.2
2,198,151 + Dshi_2077 0.61 -2.0
2,198,159 - Dshi_2077 0.62 +2.3
2,198,173 + Dshi_2077 0.63 -2.7
2,198,219 + Dshi_2077 0.69 -0.6
2,198,322 + Dshi_2077 0.81 +1.0
2,198,328 - Dshi_2077 0.82 +3.5
2,198,342 - Dshi_2077 0.83 +1.5
2,198,495 - -2.6
2,198,513 + +1.2
2,198,516 - -1.4
2,198,523 + +0.1
2,198,526 - +1.0
2,198,537 + -1.4

Or see this region's nucleotide sequence