Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2066

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2064 and Dshi_2065 are separated by 75 nucleotidesDshi_2065 and Dshi_2066 are separated by 5 nucleotidesDshi_2066 and Dshi_2067 are separated by 111 nucleotides Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020 _2065 Dshi_2066: Dshi_2066 - hypothetical protein (RefSeq), at 2,187,026 to 2,187,301 _2066 Dshi_2067: Dshi_2067 - sulphate transporter (RefSeq), at 2,187,413 to 2,189,017 _2067 Position (kb) 2187 2188Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2186.373 kb on + strandat 2186.417 kb on - strandat 2186.677 kb on + strand, within Dshi_2065at 2186.683 kb on - strand, within Dshi_2065at 2186.714 kb on + strand, within Dshi_2065at 2187.093 kb on + strand, within Dshi_2066at 2187.363 kb on + strandat 2187.383 kb on - strandat 2187.445 kb on - strandat 2187.515 kb on - strandat 2187.557 kb on + strandat 2187.651 kb on + strand, within Dshi_2067at 2187.658 kb on - strand, within Dshi_2067at 2187.756 kb on + strand, within Dshi_2067at 2187.783 kb on + strand, within Dshi_2067at 2187.830 kb on - strand, within Dshi_2067at 2187.876 kb on + strand, within Dshi_2067at 2187.884 kb on - strand, within Dshi_2067at 2188.221 kb on - strand, within Dshi_2067at 2188.221 kb on - strand, within Dshi_2067at 2188.221 kb on - strand, within Dshi_2067at 2188.256 kb on + strand, within Dshi_2067at 2188.262 kb on + strand, within Dshi_2067

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,186,373 + -0.7
2,186,417 - -1.0
2,186,677 + Dshi_2065 0.43 +2.0
2,186,683 - Dshi_2065 0.44 +1.7
2,186,714 + Dshi_2065 0.49 -0.5
2,187,093 + Dshi_2066 0.24 -0.6
2,187,363 + +0.3
2,187,383 - +1.3
2,187,445 - -1.6
2,187,515 - -2.5
2,187,557 + -2.0
2,187,651 + Dshi_2067 0.15 +1.0
2,187,658 - Dshi_2067 0.15 -1.9
2,187,756 + Dshi_2067 0.21 +3.3
2,187,783 + Dshi_2067 0.23 +0.5
2,187,830 - Dshi_2067 0.26 -2.4
2,187,876 + Dshi_2067 0.29 +0.1
2,187,884 - Dshi_2067 0.29 +2.0
2,188,221 - Dshi_2067 0.50 +2.0
2,188,221 - Dshi_2067 0.50 -1.9
2,188,221 - Dshi_2067 0.50 +1.0
2,188,256 + Dshi_2067 0.53 -2.4
2,188,262 + Dshi_2067 0.53 +1.0

Or see this region's nucleotide sequence