Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2053

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2051 and Dshi_2052 overlap by 4 nucleotidesDshi_2052 and Dshi_2053 are separated by 779 nucleotidesDshi_2053 and Dshi_2054 are separated by 161 nucleotides Dshi_2051: Dshi_2051 - hypothetical protein (RefSeq), at 2,171,569 to 2,172,045 _2051 Dshi_2052: Dshi_2052 - hypothetical protein (RefSeq), at 2,172,042 to 2,172,206 _2052 Dshi_2053: Dshi_2053 - hypothetical protein (RefSeq), at 2,172,986 to 2,173,456 _2053 Dshi_2054: Dshi_2054 - histone deacetylase superfamily (RefSeq), at 2,173,618 to 2,174,742 _2054 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2172.085 kb on + strand, within Dshi_2052at 2172.103 kb on + strand, within Dshi_2052at 2172.204 kb on - strandat 2172.211 kb on - strandat 2172.262 kb on + strandat 2172.317 kb on + strandat 2172.335 kb on - strandat 2172.368 kb on - strandat 2172.483 kb on - strandat 2172.542 kb on + strandat 2172.544 kb on + strandat 2173.622 kb on - strandat 2173.685 kb on + strandat 2173.725 kb on - strandat 2173.762 kb on + strand, within Dshi_2054at 2173.765 kb on - strand, within Dshi_2054at 2173.765 kb on - strand, within Dshi_2054at 2173.770 kb on - strand, within Dshi_2054at 2173.841 kb on - strand, within Dshi_2054at 2173.870 kb on - strand, within Dshi_2054at 2174.037 kb on + strand, within Dshi_2054at 2174.055 kb on - strand, within Dshi_2054at 2174.115 kb on - strand, within Dshi_2054at 2174.141 kb on - strand, within Dshi_2054at 2174.217 kb on - strand, within Dshi_2054at 2174.441 kb on + strand, within Dshi_2054

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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2,172,085 + Dshi_2052 0.26 +0.5
2,172,103 + Dshi_2052 0.37 -2.6
2,172,204 - +0.5
2,172,211 - -0.6
2,172,262 + -3.3
2,172,317 + -0.0
2,172,335 - -2.4
2,172,368 - -2.2
2,172,483 - -1.0
2,172,542 + -0.9
2,172,544 + -1.9
2,173,622 - -1.2
2,173,685 + -0.4
2,173,725 - +1.7
2,173,762 + Dshi_2054 0.13 -0.9
2,173,765 - Dshi_2054 0.13 -0.6
2,173,765 - Dshi_2054 0.13 -1.0
2,173,770 - Dshi_2054 0.14 -3.1
2,173,841 - Dshi_2054 0.20 +3.5
2,173,870 - Dshi_2054 0.22 -0.5
2,174,037 + Dshi_2054 0.37 -0.0
2,174,055 - Dshi_2054 0.39 -2.0
2,174,115 - Dshi_2054 0.44 -1.3
2,174,141 - Dshi_2054 0.46 -1.4
2,174,217 - Dshi_2054 0.53 -1.4
2,174,441 + Dshi_2054 0.73 -0.3

Or see this region's nucleotide sequence