Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1872

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1870 and Dshi_1871 are separated by 75 nucleotidesDshi_1871 and Dshi_1872 are separated by 151 nucleotidesDshi_1872 and Dshi_1873 are separated by 153 nucleotidesDshi_1873 and Dshi_1874 are separated by 67 nucleotides Dshi_1870: Dshi_1870 - glutamine amidotransferase class-II (RefSeq), at 1,949,574 to 1,950,500 _1870 Dshi_1871: Dshi_1871 - transcriptional regulator, XRE family (RefSeq), at 1,950,576 to 1,951,223 _1871 Dshi_1872: Dshi_1872 - hypothetical protein (RefSeq), at 1,951,375 to 1,952,643 _1872 Dshi_1873: Dshi_1873 - cytochrome c class I (RefSeq), at 1,952,797 to 1,953,105 _1873 Dshi_1874: Dshi_1874 - transcriptional regulator, TetR family (RefSeq), at 1,953,173 to 1,953,769 _1874 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1950.404 kb on - strand, within Dshi_1870at 1950.714 kb on - strand, within Dshi_1871at 1950.802 kb on + strand, within Dshi_1871at 1950.807 kb on + strand, within Dshi_1871at 1950.820 kb on - strand, within Dshi_1871at 1950.834 kb on - strand, within Dshi_1871at 1950.880 kb on - strand, within Dshi_1871at 1951.105 kb on + strand, within Dshi_1871at 1951.113 kb on - strand, within Dshi_1871at 1951.254 kb on + strandat 1951.333 kb on + strandat 1951.341 kb on - strandat 1951.415 kb on + strandat 1951.500 kb on + strandat 1951.736 kb on + strand, within Dshi_1872at 1951.756 kb on - strand, within Dshi_1872at 1951.896 kb on + strand, within Dshi_1872at 1951.907 kb on + strand, within Dshi_1872at 1951.930 kb on - strand, within Dshi_1872at 1952.386 kb on + strand, within Dshi_1872at 1952.434 kb on + strand, within Dshi_1872at 1952.583 kb on - strandat 1952.615 kb on + strandat 1952.625 kb on + strandat 1952.733 kb on - strandat 1952.736 kb on + strandat 1952.793 kb on + strandat 1952.985 kb on + strand, within Dshi_1873at 1953.006 kb on + strand, within Dshi_1873at 1953.034 kb on - strand, within Dshi_1873at 1953.057 kb on - strand, within Dshi_1873at 1953.075 kb on + strandat 1953.083 kb on - strandat 1953.083 kb on - strandat 1953.196 kb on - strandat 1953.332 kb on - strand, within Dshi_1874at 1953.540 kb on - strand, within Dshi_1874at 1953.623 kb on - strand, within Dshi_1874at 1953.629 kb on - strand, within Dshi_1874

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,950,404 - Dshi_1870 0.90 +1.8
1,950,714 - Dshi_1871 0.21 +4.3
1,950,802 + Dshi_1871 0.35 +1.0
1,950,807 + Dshi_1871 0.36 -3.8
1,950,820 - Dshi_1871 0.38 -1.0
1,950,834 - Dshi_1871 0.40 +1.0
1,950,880 - Dshi_1871 0.47 -2.6
1,951,105 + Dshi_1871 0.82 -2.1
1,951,113 - Dshi_1871 0.83 -1.8
1,951,254 + -1.6
1,951,333 + +1.0
1,951,341 - -1.2
1,951,415 + -0.0
1,951,500 + -1.3
1,951,736 + Dshi_1872 0.28 +1.0
1,951,756 - Dshi_1872 0.30 -3.0
1,951,896 + Dshi_1872 0.41 -1.1
1,951,907 + Dshi_1872 0.42 +1.0
1,951,930 - Dshi_1872 0.44 -1.0
1,952,386 + Dshi_1872 0.80 -1.3
1,952,434 + Dshi_1872 0.83 -0.6
1,952,583 - -2.5
1,952,615 + +1.6
1,952,625 + -2.0
1,952,733 - -4.1
1,952,736 + +2.6
1,952,793 + -2.9
1,952,985 + Dshi_1873 0.61 +0.2
1,953,006 + Dshi_1873 0.68 +1.0
1,953,034 - Dshi_1873 0.77 -1.8
1,953,057 - Dshi_1873 0.84 -3.0
1,953,075 + +3.3
1,953,083 - +0.2
1,953,083 - -2.7
1,953,196 - +1.0
1,953,332 - Dshi_1874 0.27 +2.6
1,953,540 - Dshi_1874 0.61 +1.0
1,953,623 - Dshi_1874 0.75 -0.6
1,953,629 - Dshi_1874 0.76 -1.3

Or see this region's nucleotide sequence