Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1686

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1685 and Dshi_1686 are separated by 10 nucleotidesDshi_1686 and Dshi_1687 are separated by 127 nucleotidesDshi_1687 and Dshi_1688 are separated by 189 nucleotides Dshi_1685: Dshi_1685 - Radical SAM domain protein (RefSeq), at 1,754,813 to 1,755,757 _1685 Dshi_1686: Dshi_1686 - transglutaminase domain protein (RefSeq), at 1,755,768 to 1,756,544 _1686 Dshi_1687: Dshi_1687 - HNH endonuclease (RefSeq), at 1,756,672 to 1,757,268 _1687 Dshi_1688: Dshi_1688 - phospholipase/Carboxylesterase (RefSeq), at 1,757,458 to 1,758,129 _1688 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1754.878 kb on - strandat 1754.930 kb on - strand, within Dshi_1685at 1754.986 kb on - strand, within Dshi_1685at 1754.992 kb on + strand, within Dshi_1685at 1755.001 kb on - strand, within Dshi_1685at 1755.001 kb on - strand, within Dshi_1685at 1755.054 kb on - strand, within Dshi_1685at 1755.115 kb on + strand, within Dshi_1685at 1755.138 kb on + strand, within Dshi_1685at 1755.255 kb on - strand, within Dshi_1685at 1755.421 kb on + strand, within Dshi_1685at 1755.461 kb on - strand, within Dshi_1685at 1755.498 kb on + strand, within Dshi_1685at 1755.728 kb on + strandat 1755.856 kb on + strand, within Dshi_1686at 1755.925 kb on + strand, within Dshi_1686at 1756.017 kb on - strand, within Dshi_1686at 1756.161 kb on - strand, within Dshi_1686at 1756.182 kb on - strand, within Dshi_1686at 1756.323 kb on - strand, within Dshi_1686at 1756.323 kb on - strand, within Dshi_1686at 1756.334 kb on + strand, within Dshi_1686at 1756.352 kb on - strand, within Dshi_1686at 1756.492 kb on + strandat 1756.539 kb on - strandat 1756.723 kb on - strandat 1756.791 kb on + strand, within Dshi_1687at 1756.795 kb on - strand, within Dshi_1687at 1756.805 kb on + strand, within Dshi_1687at 1756.811 kb on - strand, within Dshi_1687at 1756.895 kb on - strand, within Dshi_1687at 1756.897 kb on + strand, within Dshi_1687at 1756.926 kb on - strand, within Dshi_1687at 1757.007 kb on - strand, within Dshi_1687at 1757.071 kb on - strand, within Dshi_1687at 1757.129 kb on - strand, within Dshi_1687at 1757.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,754,878 - +0.5
1,754,930 - Dshi_1685 0.12 -1.6
1,754,986 - Dshi_1685 0.18 -0.2
1,754,992 + Dshi_1685 0.19 -2.4
1,755,001 - Dshi_1685 0.20 +1.4
1,755,001 - Dshi_1685 0.20 +1.1
1,755,054 - Dshi_1685 0.26 -0.6
1,755,115 + Dshi_1685 0.32 +0.0
1,755,138 + Dshi_1685 0.34 +1.6
1,755,255 - Dshi_1685 0.47 +0.1
1,755,421 + Dshi_1685 0.64 +0.2
1,755,461 - Dshi_1685 0.69 +0.6
1,755,498 + Dshi_1685 0.72 -2.7
1,755,728 + +4.0
1,755,856 + Dshi_1686 0.11 -2.9
1,755,925 + Dshi_1686 0.20 -1.3
1,756,017 - Dshi_1686 0.32 +0.5
1,756,161 - Dshi_1686 0.51 +1.5
1,756,182 - Dshi_1686 0.53 +3.5
1,756,323 - Dshi_1686 0.71 -1.2
1,756,323 - Dshi_1686 0.71 -1.0
1,756,334 + Dshi_1686 0.73 +0.2
1,756,352 - Dshi_1686 0.75 -0.5
1,756,492 + +0.9
1,756,539 - +0.3
1,756,723 - -2.4
1,756,791 + Dshi_1687 0.20 -1.3
1,756,795 - Dshi_1687 0.21 +0.5
1,756,805 + Dshi_1687 0.22 +0.9
1,756,811 - Dshi_1687 0.23 -3.3
1,756,895 - Dshi_1687 0.37 -0.1
1,756,897 + Dshi_1687 0.38 -1.6
1,756,926 - Dshi_1687 0.43 -0.4
1,757,007 - Dshi_1687 0.56 -0.7
1,757,071 - Dshi_1687 0.67 +2.4
1,757,129 - Dshi_1687 0.77 -1.9
1,757,360 + +0.4

Or see this region's nucleotide sequence