Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1625

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1623 and Dshi_1624 are separated by 0 nucleotidesDshi_1624 and Dshi_1625 are separated by 29 nucleotidesDshi_1625 and Dshi_1626 overlap by 1 nucleotides Dshi_1623: Dshi_1623 - cysteine desulfurase, SufS subfamily (RefSeq), at 1,688,923 to 1,690,143 _1623 Dshi_1624: Dshi_1624 - hypothetical protein (RefSeq), at 1,690,144 to 1,690,743 _1624 Dshi_1625: Dshi_1625 - hypothetical protein (RefSeq), at 1,690,773 to 1,691,270 _1625 Dshi_1626: Dshi_1626 - SufBD protein (RefSeq), at 1,691,270 to 1,692,553 _1626 Position (kb) 1690 1691 1692Strain fitness (log2 ratio) -2 -1 0 1 2at 1690.678 kb on - strand, within Dshi_1624at 1690.750 kb on + strandat 1690.758 kb on - strandat 1690.824 kb on + strand, within Dshi_1625at 1690.939 kb on + strand, within Dshi_1625at 1690.950 kb on + strand, within Dshi_1625at 1691.007 kb on + strand, within Dshi_1625at 1691.172 kb on - strand, within Dshi_1625at 1691.180 kb on - strand, within Dshi_1625at 1691.220 kb on - strand, within Dshi_1625at 1691.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,690,678 - Dshi_1624 0.89 -2.2
1,690,750 + -0.5
1,690,758 - -1.1
1,690,824 + Dshi_1625 0.10 +0.4
1,690,939 + Dshi_1625 0.33 +1.6
1,690,950 + Dshi_1625 0.36 +0.3
1,691,007 + Dshi_1625 0.47 +1.9
1,691,172 - Dshi_1625 0.80 +0.6
1,691,180 - Dshi_1625 0.82 +1.9
1,691,220 - Dshi_1625 0.90 -2.7
1,691,319 - -0.8

Or see this region's nucleotide sequence