Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1554 and Dshi_1555 are separated by 69 nucleotides Dshi_1555 and Dshi_1556 are separated by 18 nucleotides Dshi_1556 and Dshi_1557 overlap by 14 nucleotides Dshi_1557 and Dshi_1558 overlap by 34 nucleotides
Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161
_1554
Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857
_1555
Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435
_1556
Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090
_1557
Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377
_1558
Position (kb)
1617
1618
1619
1620 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1617.043 kb on + strand, within Dshi_1554 at 1617.373 kb on + strand, within Dshi_1555 at 1617.496 kb on - strand, within Dshi_1555 at 1617.647 kb on + strand, within Dshi_1555 at 1617.689 kb on + strand, within Dshi_1555 at 1617.703 kb on + strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.733 kb on - strand, within Dshi_1555 at 1617.886 kb on + strand at 1617.940 kb on + strand at 1617.984 kb on + strand at 1617.990 kb on + strand at 1618.402 kb on - strand, within Dshi_1556 at 1618.428 kb on - strand, within Dshi_1556 at 1618.430 kb on + strand, within Dshi_1556 at 1618.713 kb on + strand, within Dshi_1556 at 1618.878 kb on + strand, within Dshi_1556 at 1618.886 kb on - strand, within Dshi_1556 at 1618.939 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.233 kb on + strand, within Dshi_1556 at 1619.692 kb on + strand, within Dshi_1557 at 1619.752 kb on - strand, within Dshi_1557 at 1620.354 kb on + strand at 1620.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 1,617,043 + Dshi_1554 0.84 -2.9 1,617,373 + Dshi_1555 0.23 -1.9 1,617,496 - Dshi_1555 0.42 +0.4 1,617,647 + Dshi_1555 0.66 -0.9 1,617,689 + Dshi_1555 0.73 -0.8 1,617,703 + Dshi_1555 0.75 +0.2 1,617,711 - Dshi_1555 0.77 -1.7 1,617,711 - Dshi_1555 0.77 -2.6 1,617,733 - Dshi_1555 0.80 -0.9 1,617,886 + -1.9 1,617,940 + -0.2 1,617,984 + -1.4 1,617,990 + +0.6 1,618,402 - Dshi_1556 0.34 +0.7 1,618,428 - Dshi_1556 0.35 -1.9 1,618,430 + Dshi_1556 0.36 +2.7 1,618,713 + Dshi_1556 0.54 +0.7 1,618,878 + Dshi_1556 0.64 -1.0 1,618,886 - Dshi_1556 0.65 -1.3 1,618,939 + Dshi_1556 0.68 -1.3 1,619,104 + Dshi_1556 0.79 -1.5 1,619,104 + Dshi_1556 0.79 -0.1 1,619,233 + Dshi_1556 0.87 -2.2 1,619,692 + Dshi_1557 0.40 -2.5 1,619,752 - Dshi_1557 0.49 +0.7 1,620,354 + +1.3 1,620,374 + -3.1
Or see this region's nucleotide sequence