Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1556

Experiment: m.b. Chlorate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1554 and Dshi_1555 are separated by 69 nucleotidesDshi_1555 and Dshi_1556 are separated by 18 nucleotidesDshi_1556 and Dshi_1557 overlap by 14 nucleotidesDshi_1557 and Dshi_1558 overlap by 34 nucleotides Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161 _1554 Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857 _1555 Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435 _1556 Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090 _1557 Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377 _1558 Position (kb) 1617 1618 1619 1620Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1617.043 kb on + strand, within Dshi_1554at 1617.373 kb on + strand, within Dshi_1555at 1617.496 kb on - strand, within Dshi_1555at 1617.647 kb on + strand, within Dshi_1555at 1617.689 kb on + strand, within Dshi_1555at 1617.703 kb on + strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.711 kb on - strand, within Dshi_1555at 1617.733 kb on - strand, within Dshi_1555at 1617.886 kb on + strandat 1617.940 kb on + strandat 1617.984 kb on + strandat 1617.990 kb on + strandat 1618.402 kb on - strand, within Dshi_1556at 1618.428 kb on - strand, within Dshi_1556at 1618.430 kb on + strand, within Dshi_1556at 1618.713 kb on + strand, within Dshi_1556at 1618.878 kb on + strand, within Dshi_1556at 1618.886 kb on - strand, within Dshi_1556at 1618.939 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.104 kb on + strand, within Dshi_1556at 1619.233 kb on + strand, within Dshi_1556at 1619.692 kb on + strand, within Dshi_1557at 1619.752 kb on - strand, within Dshi_1557at 1620.354 kb on + strandat 1620.374 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
remove
1,617,043 + Dshi_1554 0.84 -2.9
1,617,373 + Dshi_1555 0.23 -1.9
1,617,496 - Dshi_1555 0.42 +0.4
1,617,647 + Dshi_1555 0.66 -0.9
1,617,689 + Dshi_1555 0.73 -0.8
1,617,703 + Dshi_1555 0.75 +0.2
1,617,711 - Dshi_1555 0.77 -1.7
1,617,711 - Dshi_1555 0.77 -2.6
1,617,733 - Dshi_1555 0.80 -0.9
1,617,886 + -1.9
1,617,940 + -0.2
1,617,984 + -1.4
1,617,990 + +0.6
1,618,402 - Dshi_1556 0.34 +0.7
1,618,428 - Dshi_1556 0.35 -1.9
1,618,430 + Dshi_1556 0.36 +2.7
1,618,713 + Dshi_1556 0.54 +0.7
1,618,878 + Dshi_1556 0.64 -1.0
1,618,886 - Dshi_1556 0.65 -1.3
1,618,939 + Dshi_1556 0.68 -1.3
1,619,104 + Dshi_1556 0.79 -1.5
1,619,104 + Dshi_1556 0.79 -0.1
1,619,233 + Dshi_1556 0.87 -2.2
1,619,692 + Dshi_1557 0.40 -2.5
1,619,752 - Dshi_1557 0.49 +0.7
1,620,354 + +1.3
1,620,374 + -3.1

Or see this region's nucleotide sequence