Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1536

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1535 and Dshi_1536 are separated by 16 nucleotidesDshi_1536 and Dshi_1537 overlap by 1 nucleotidesDshi_1537 and Dshi_1538 are separated by 4 nucleotides Dshi_1535: Dshi_1535 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 1,596,265 to 1,597,617 _1535 Dshi_1536: Dshi_1536 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,597,634 to 1,598,428 _1536 Dshi_1537: Dshi_1537 - phosphate uptake regulator, PhoU (RefSeq), at 1,598,428 to 1,599,141 _1537 Dshi_1538: Dshi_1538 - two component transcriptional regulator, winged helix family (RefSeq), at 1,599,146 to 1,599,832 _1538 Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -3 -2 -1 0 1at 1598.883 kb on + strand, within Dshi_1537at 1598.922 kb on + strand, within Dshi_1537at 1598.947 kb on + strand, within Dshi_1537at 1599.136 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,598,883 + Dshi_1537 0.64 -3.5
1,598,922 + Dshi_1537 0.69 -2.2
1,598,947 + Dshi_1537 0.73 -1.9
1,599,136 + +0.6

Or see this region's nucleotide sequence