Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1502

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1500 and Dshi_1501 are separated by 84 nucleotidesDshi_1501 and Dshi_1502 overlap by 4 nucleotidesDshi_1502 and Dshi_1503 are separated by 3 nucleotidesDshi_1503 and Dshi_1504 overlap by 1 nucleotides Dshi_1500: Dshi_1500 - outer membrane chaperone Skp (OmpH) (RefSeq), at 1,561,065 to 1,561,640 _1500 Dshi_1501: Dshi_1501 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (RefSeq), at 1,561,725 to 1,562,216 _1501 Dshi_1502: Dshi_1502 - acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (RefSeq), at 1,562,213 to 1,563,013 _1502 Dshi_1503: Dshi_1503 - protein of unknown function DUF1009 (RefSeq), at 1,563,017 to 1,563,814 _1503 Dshi_1504: Dshi_1504 - lipid-A-disaccharide synthase (RefSeq), at 1,563,814 to 1,564,956 _1504 Position (kb) 1562 1563 1564Strain fitness (log2 ratio) -1 0 1at 1561.382 kb on + strandat 1561.465 kb on + strand, within Dshi_1500

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,561,382 + +0.6
1,561,465 + Dshi_1500 0.69 +0.2

Or see this region's nucleotide sequence