Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1479 and Dshi_1480 are separated by 393 nucleotides Dshi_1480 and Dshi_1481 are separated by 185 nucleotides Dshi_1481 and Dshi_1482 overlap by 4 nucleotides
Dshi_1479: Dshi_1479 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,534,029 to 1,534,640
_1479
Dshi_1480: Dshi_1480 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,535,034 to 1,536,077
_1480
Dshi_1481: Dshi_1481 - hypothetical protein (RefSeq), at 1,536,263 to 1,536,844
_1481
Dshi_1482: Dshi_1482 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,536,841 to 1,538,193
_1482
Position (kb)
1535
1536
1537 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1534.735 kb on - strand at 1535.053 kb on - strand at 1535.073 kb on + strand at 1535.084 kb on + strand at 1535.143 kb on + strand, within Dshi_1480 at 1535.300 kb on + strand, within Dshi_1480 at 1535.366 kb on + strand, within Dshi_1480 at 1535.451 kb on + strand, within Dshi_1480 at 1535.455 kb on - strand, within Dshi_1480 at 1535.484 kb on - strand, within Dshi_1480 at 1535.484 kb on - strand, within Dshi_1480 at 1535.533 kb on + strand, within Dshi_1480 at 1535.551 kb on - strand, within Dshi_1480 at 1535.589 kb on - strand, within Dshi_1480 at 1535.747 kb on - strand, within Dshi_1480 at 1535.851 kb on - strand, within Dshi_1480 at 1535.890 kb on - strand, within Dshi_1480 at 1535.979 kb on + strand at 1535.987 kb on - strand at 1536.033 kb on - strand at 1536.084 kb on + strand at 1536.161 kb on + strand at 1536.218 kb on - strand at 1536.282 kb on - strand at 1536.320 kb on + strand at 1536.754 kb on + strand, within Dshi_1481 at 1536.794 kb on + strand at 1536.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 1,534,735 - -1.7 1,535,053 - -0.5 1,535,073 + -1.9 1,535,084 + +1.4 1,535,143 + Dshi_1480 0.10 -1.4 1,535,300 + Dshi_1480 0.25 -2.1 1,535,366 + Dshi_1480 0.32 -1.7 1,535,451 + Dshi_1480 0.40 -1.5 1,535,455 - Dshi_1480 0.40 -0.5 1,535,484 - Dshi_1480 0.43 +1.1 1,535,484 - Dshi_1480 0.43 -1.3 1,535,533 + Dshi_1480 0.48 -2.4 1,535,551 - Dshi_1480 0.50 -1.4 1,535,589 - Dshi_1480 0.53 -1.4 1,535,747 - Dshi_1480 0.68 -1.4 1,535,851 - Dshi_1480 0.78 -0.1 1,535,890 - Dshi_1480 0.82 -1.0 1,535,979 + -3.2 1,535,987 - +0.6 1,536,033 - -1.0 1,536,084 + +0.3 1,536,161 + -2.7 1,536,218 - +0.6 1,536,282 - -0.6 1,536,320 + -3.9 1,536,754 + Dshi_1481 0.84 +0.6 1,536,794 + +1.6 1,536,848 + -0.0
Or see this region's nucleotide sequence