Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1480

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1479 and Dshi_1480 are separated by 393 nucleotidesDshi_1480 and Dshi_1481 are separated by 185 nucleotidesDshi_1481 and Dshi_1482 overlap by 4 nucleotides Dshi_1479: Dshi_1479 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,534,029 to 1,534,640 _1479 Dshi_1480: Dshi_1480 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,535,034 to 1,536,077 _1480 Dshi_1481: Dshi_1481 - hypothetical protein (RefSeq), at 1,536,263 to 1,536,844 _1481 Dshi_1482: Dshi_1482 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,536,841 to 1,538,193 _1482 Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1534.735 kb on - strandat 1535.053 kb on - strandat 1535.073 kb on + strandat 1535.084 kb on + strandat 1535.143 kb on + strand, within Dshi_1480at 1535.300 kb on + strand, within Dshi_1480at 1535.366 kb on + strand, within Dshi_1480at 1535.451 kb on + strand, within Dshi_1480at 1535.455 kb on - strand, within Dshi_1480at 1535.484 kb on - strand, within Dshi_1480at 1535.484 kb on - strand, within Dshi_1480at 1535.533 kb on + strand, within Dshi_1480at 1535.551 kb on - strand, within Dshi_1480at 1535.589 kb on - strand, within Dshi_1480at 1535.747 kb on - strand, within Dshi_1480at 1535.851 kb on - strand, within Dshi_1480at 1535.890 kb on - strand, within Dshi_1480at 1535.979 kb on + strandat 1535.987 kb on - strandat 1536.033 kb on - strandat 1536.084 kb on + strandat 1536.161 kb on + strandat 1536.218 kb on - strandat 1536.282 kb on - strandat 1536.320 kb on + strandat 1536.754 kb on + strand, within Dshi_1481at 1536.794 kb on + strandat 1536.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,534,735 - -1.7
1,535,053 - -0.5
1,535,073 + -1.9
1,535,084 + +1.4
1,535,143 + Dshi_1480 0.10 -1.4
1,535,300 + Dshi_1480 0.25 -2.1
1,535,366 + Dshi_1480 0.32 -1.7
1,535,451 + Dshi_1480 0.40 -1.5
1,535,455 - Dshi_1480 0.40 -0.5
1,535,484 - Dshi_1480 0.43 +1.1
1,535,484 - Dshi_1480 0.43 -1.3
1,535,533 + Dshi_1480 0.48 -2.4
1,535,551 - Dshi_1480 0.50 -1.4
1,535,589 - Dshi_1480 0.53 -1.4
1,535,747 - Dshi_1480 0.68 -1.4
1,535,851 - Dshi_1480 0.78 -0.1
1,535,890 - Dshi_1480 0.82 -1.0
1,535,979 + -3.2
1,535,987 - +0.6
1,536,033 - -1.0
1,536,084 + +0.3
1,536,161 + -2.7
1,536,218 - +0.6
1,536,282 - -0.6
1,536,320 + -3.9
1,536,754 + Dshi_1481 0.84 +0.6
1,536,794 + +1.6
1,536,848 + -0.0

Or see this region's nucleotide sequence