Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1457 and Dshi_1458 overlap by 50 nucleotides Dshi_1458 and Dshi_6026 are separated by 67 nucleotides Dshi_6026 and Dshi_1459 are separated by 155 nucleotides
Dshi_1457: Dshi_1457 - type III restriction protein res subunit (RefSeq), at 1,514,658 to 1,516,022
_1457
Dshi_1458: Dshi_1458 - site-specific recombinase, phage integrase family (RefSeq), at 1,515,973 to 1,516,368
_1458
Dshi_6026: Dshi_6026 - tRNA-Ser (RefSeq), at 1,516,436 to 1,516,524
_6026
Dshi_1459: Dshi_1459 - hypothetical protein (RefSeq), at 1,516,680 to 1,517,501
_1459
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1514.985 kb on + strand, within Dshi_1457 at 1514.993 kb on - strand, within Dshi_1457 at 1515.019 kb on + strand, within Dshi_1457 at 1515.038 kb on - strand, within Dshi_1457 at 1515.064 kb on - strand, within Dshi_1457 at 1515.086 kb on + strand, within Dshi_1457 at 1515.094 kb on + strand, within Dshi_1457 at 1515.094 kb on - strand, within Dshi_1457 at 1515.142 kb on - strand, within Dshi_1457 at 1515.178 kb on - strand, within Dshi_1457 at 1515.278 kb on + strand, within Dshi_1457 at 1515.308 kb on - strand, within Dshi_1457 at 1515.352 kb on + strand, within Dshi_1457 at 1515.352 kb on + strand, within Dshi_1457 at 1515.353 kb on - strand, within Dshi_1457 at 1515.353 kb on - strand, within Dshi_1457 at 1515.476 kb on + strand, within Dshi_1457 at 1515.529 kb on - strand, within Dshi_1457 at 1515.531 kb on + strand, within Dshi_1457 at 1515.604 kb on + strand, within Dshi_1457 at 1515.690 kb on - strand, within Dshi_1457 at 1515.776 kb on + strand, within Dshi_1457 at 1515.842 kb on + strand, within Dshi_1457 at 1515.871 kb on - strand, within Dshi_1457 at 1516.023 kb on - strand, within Dshi_1458 at 1516.172 kb on - strand, within Dshi_1458 at 1516.192 kb on - strand, within Dshi_1458 at 1516.299 kb on + strand, within Dshi_1458 at 1516.299 kb on + strand, within Dshi_1458 at 1516.302 kb on - strand, within Dshi_1458 at 1516.310 kb on + strand, within Dshi_1458 at 1516.594 kb on - strand at 1516.709 kb on - strand at 1516.732 kb on - strand at 1516.817 kb on + strand, within Dshi_1459 at 1516.951 kb on - strand, within Dshi_1459 at 1516.979 kb on + strand, within Dshi_1459 at 1517.082 kb on + strand, within Dshi_1459 at 1517.102 kb on + strand, within Dshi_1459 at 1517.102 kb on + strand, within Dshi_1459 at 1517.103 kb on + strand, within Dshi_1459 at 1517.110 kb on - strand, within Dshi_1459 at 1517.111 kb on - strand, within Dshi_1459 at 1517.121 kb on - strand, within Dshi_1459 at 1517.197 kb on + strand, within Dshi_1459 at 1517.232 kb on + strand, within Dshi_1459 at 1517.306 kb on + strand, within Dshi_1459
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 1,514,985 + Dshi_1457 0.24 +1.4 1,514,993 - Dshi_1457 0.25 -3.0 1,515,019 + Dshi_1457 0.26 -2.1 1,515,038 - Dshi_1457 0.28 -0.2 1,515,064 - Dshi_1457 0.30 -1.3 1,515,086 + Dshi_1457 0.31 +0.7 1,515,094 + Dshi_1457 0.32 +1.8 1,515,094 - Dshi_1457 0.32 -0.7 1,515,142 - Dshi_1457 0.35 -0.6 1,515,178 - Dshi_1457 0.38 -1.8 1,515,278 + Dshi_1457 0.45 +0.7 1,515,308 - Dshi_1457 0.48 +0.5 1,515,352 + Dshi_1457 0.51 -2.9 1,515,352 + Dshi_1457 0.51 +0.7 1,515,353 - Dshi_1457 0.51 -0.0 1,515,353 - Dshi_1457 0.51 -1.3 1,515,476 + Dshi_1457 0.60 -0.3 1,515,529 - Dshi_1457 0.64 +0.7 1,515,531 + Dshi_1457 0.64 -1.5 1,515,604 + Dshi_1457 0.69 -1.9 1,515,690 - Dshi_1457 0.76 -0.1 1,515,776 + Dshi_1457 0.82 -0.6 1,515,842 + Dshi_1457 0.87 -0.9 1,515,871 - Dshi_1457 0.89 -0.6 1,516,023 - Dshi_1458 0.13 -1.9 1,516,172 - Dshi_1458 0.50 -1.8 1,516,192 - Dshi_1458 0.55 -0.7 1,516,299 + Dshi_1458 0.82 -1.2 1,516,299 + Dshi_1458 0.82 +0.2 1,516,302 - Dshi_1458 0.83 -2.0 1,516,310 + Dshi_1458 0.85 -1.9 1,516,594 - -0.6 1,516,709 - -3.5 1,516,732 - -2.1 1,516,817 + Dshi_1459 0.17 -1.3 1,516,951 - Dshi_1459 0.33 -1.3 1,516,979 + Dshi_1459 0.36 +2.2 1,517,082 + Dshi_1459 0.49 +3.0 1,517,102 + Dshi_1459 0.51 -1.3 1,517,102 + Dshi_1459 0.51 +0.7 1,517,103 + Dshi_1459 0.51 +0.2 1,517,110 - Dshi_1459 0.52 -2.2 1,517,111 - Dshi_1459 0.52 -1.9 1,517,121 - Dshi_1459 0.54 -2.3 1,517,197 + Dshi_1459 0.63 -1.6 1,517,232 + Dshi_1459 0.67 +3.5 1,517,306 + Dshi_1459 0.76 -3.2
Or see this region's nucleotide sequence