Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1458

Experiment: m.b. Chlorate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1457 and Dshi_1458 overlap by 50 nucleotidesDshi_1458 and Dshi_6026 are separated by 67 nucleotidesDshi_6026 and Dshi_1459 are separated by 155 nucleotides Dshi_1457: Dshi_1457 - type III restriction protein res subunit (RefSeq), at 1,514,658 to 1,516,022 _1457 Dshi_1458: Dshi_1458 - site-specific recombinase, phage integrase family (RefSeq), at 1,515,973 to 1,516,368 _1458 Dshi_6026: Dshi_6026 - tRNA-Ser (RefSeq), at 1,516,436 to 1,516,524 _6026 Dshi_1459: Dshi_1459 - hypothetical protein (RefSeq), at 1,516,680 to 1,517,501 _1459 Position (kb) 1515 1516 1517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1514.985 kb on + strand, within Dshi_1457at 1514.993 kb on - strand, within Dshi_1457at 1515.019 kb on + strand, within Dshi_1457at 1515.038 kb on - strand, within Dshi_1457at 1515.064 kb on - strand, within Dshi_1457at 1515.086 kb on + strand, within Dshi_1457at 1515.094 kb on + strand, within Dshi_1457at 1515.094 kb on - strand, within Dshi_1457at 1515.142 kb on - strand, within Dshi_1457at 1515.178 kb on - strand, within Dshi_1457at 1515.278 kb on + strand, within Dshi_1457at 1515.308 kb on - strand, within Dshi_1457at 1515.352 kb on + strand, within Dshi_1457at 1515.352 kb on + strand, within Dshi_1457at 1515.353 kb on - strand, within Dshi_1457at 1515.353 kb on - strand, within Dshi_1457at 1515.476 kb on + strand, within Dshi_1457at 1515.529 kb on - strand, within Dshi_1457at 1515.531 kb on + strand, within Dshi_1457at 1515.604 kb on + strand, within Dshi_1457at 1515.690 kb on - strand, within Dshi_1457at 1515.776 kb on + strand, within Dshi_1457at 1515.842 kb on + strand, within Dshi_1457at 1515.871 kb on - strand, within Dshi_1457at 1516.023 kb on - strand, within Dshi_1458at 1516.172 kb on - strand, within Dshi_1458at 1516.192 kb on - strand, within Dshi_1458at 1516.299 kb on + strand, within Dshi_1458at 1516.299 kb on + strand, within Dshi_1458at 1516.302 kb on - strand, within Dshi_1458at 1516.310 kb on + strand, within Dshi_1458at 1516.594 kb on - strandat 1516.709 kb on - strandat 1516.732 kb on - strandat 1516.817 kb on + strand, within Dshi_1459at 1516.951 kb on - strand, within Dshi_1459at 1516.979 kb on + strand, within Dshi_1459at 1517.082 kb on + strand, within Dshi_1459at 1517.102 kb on + strand, within Dshi_1459at 1517.102 kb on + strand, within Dshi_1459at 1517.103 kb on + strand, within Dshi_1459at 1517.110 kb on - strand, within Dshi_1459at 1517.111 kb on - strand, within Dshi_1459at 1517.121 kb on - strand, within Dshi_1459at 1517.197 kb on + strand, within Dshi_1459at 1517.232 kb on + strand, within Dshi_1459at 1517.306 kb on + strand, within Dshi_1459

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
remove
1,514,985 + Dshi_1457 0.24 +1.4
1,514,993 - Dshi_1457 0.25 -3.0
1,515,019 + Dshi_1457 0.26 -2.1
1,515,038 - Dshi_1457 0.28 -0.2
1,515,064 - Dshi_1457 0.30 -1.3
1,515,086 + Dshi_1457 0.31 +0.7
1,515,094 + Dshi_1457 0.32 +1.8
1,515,094 - Dshi_1457 0.32 -0.7
1,515,142 - Dshi_1457 0.35 -0.6
1,515,178 - Dshi_1457 0.38 -1.8
1,515,278 + Dshi_1457 0.45 +0.7
1,515,308 - Dshi_1457 0.48 +0.5
1,515,352 + Dshi_1457 0.51 -2.9
1,515,352 + Dshi_1457 0.51 +0.7
1,515,353 - Dshi_1457 0.51 -0.0
1,515,353 - Dshi_1457 0.51 -1.3
1,515,476 + Dshi_1457 0.60 -0.3
1,515,529 - Dshi_1457 0.64 +0.7
1,515,531 + Dshi_1457 0.64 -1.5
1,515,604 + Dshi_1457 0.69 -1.9
1,515,690 - Dshi_1457 0.76 -0.1
1,515,776 + Dshi_1457 0.82 -0.6
1,515,842 + Dshi_1457 0.87 -0.9
1,515,871 - Dshi_1457 0.89 -0.6
1,516,023 - Dshi_1458 0.13 -1.9
1,516,172 - Dshi_1458 0.50 -1.8
1,516,192 - Dshi_1458 0.55 -0.7
1,516,299 + Dshi_1458 0.82 -1.2
1,516,299 + Dshi_1458 0.82 +0.2
1,516,302 - Dshi_1458 0.83 -2.0
1,516,310 + Dshi_1458 0.85 -1.9
1,516,594 - -0.6
1,516,709 - -3.5
1,516,732 - -2.1
1,516,817 + Dshi_1459 0.17 -1.3
1,516,951 - Dshi_1459 0.33 -1.3
1,516,979 + Dshi_1459 0.36 +2.2
1,517,082 + Dshi_1459 0.49 +3.0
1,517,102 + Dshi_1459 0.51 -1.3
1,517,102 + Dshi_1459 0.51 +0.7
1,517,103 + Dshi_1459 0.51 +0.2
1,517,110 - Dshi_1459 0.52 -2.2
1,517,111 - Dshi_1459 0.52 -1.9
1,517,121 - Dshi_1459 0.54 -2.3
1,517,197 + Dshi_1459 0.63 -1.6
1,517,232 + Dshi_1459 0.67 +3.5
1,517,306 + Dshi_1459 0.76 -3.2

Or see this region's nucleotide sequence