Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1394

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1392 and Dshi_1393 are separated by 9 nucleotidesDshi_1393 and Dshi_1394 are separated by 167 nucleotidesDshi_1394 and Dshi_1395 are separated by 59 nucleotides Dshi_1392: Dshi_1392 - hypothetical protein (RefSeq), at 1,445,056 to 1,445,598 _1392 Dshi_1393: Dshi_1393 - hypothetical protein (RefSeq), at 1,445,608 to 1,446,195 _1393 Dshi_1394: Dshi_1394 - Leucyltransferase (RefSeq), at 1,446,363 to 1,447,034 _1394 Dshi_1395: Dshi_1395 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 1,447,094 to 1,448,440 _1395 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1445.501 kb on - strand, within Dshi_1392at 1445.511 kb on - strand, within Dshi_1392at 1445.573 kb on + strandat 1445.600 kb on - strandat 1445.632 kb on + strandat 1445.683 kb on - strand, within Dshi_1393at 1445.724 kb on + strand, within Dshi_1393at 1445.816 kb on - strand, within Dshi_1393at 1445.846 kb on - strand, within Dshi_1393at 1445.978 kb on - strand, within Dshi_1393at 1446.025 kb on + strand, within Dshi_1393at 1446.033 kb on - strand, within Dshi_1393at 1446.093 kb on - strand, within Dshi_1393at 1446.158 kb on + strandat 1446.436 kb on - strand, within Dshi_1394at 1446.459 kb on + strand, within Dshi_1394at 1446.523 kb on + strand, within Dshi_1394at 1446.553 kb on - strand, within Dshi_1394at 1446.553 kb on - strand, within Dshi_1394at 1446.708 kb on + strand, within Dshi_1394at 1446.722 kb on - strand, within Dshi_1394at 1446.826 kb on - strand, within Dshi_1394at 1447.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,445,501 - Dshi_1392 0.82 -0.2
1,445,511 - Dshi_1392 0.84 -2.5
1,445,573 + -1.2
1,445,600 - -2.1
1,445,632 + -2.7
1,445,683 - Dshi_1393 0.13 +0.9
1,445,724 + Dshi_1393 0.20 -1.7
1,445,816 - Dshi_1393 0.35 +0.9
1,445,846 - Dshi_1393 0.40 +1.4
1,445,978 - Dshi_1393 0.63 -4.0
1,446,025 + Dshi_1393 0.71 -0.6
1,446,033 - Dshi_1393 0.72 -2.1
1,446,093 - Dshi_1393 0.82 -1.2
1,446,158 + -1.5
1,446,436 - Dshi_1394 0.11 -0.4
1,446,459 + Dshi_1394 0.14 +1.4
1,446,523 + Dshi_1394 0.24 +0.7
1,446,553 - Dshi_1394 0.28 +0.9
1,446,553 - Dshi_1394 0.28 -1.1
1,446,708 + Dshi_1394 0.51 +0.9
1,446,722 - Dshi_1394 0.53 -2.7
1,446,826 - Dshi_1394 0.69 +0.9
1,447,100 - -2.7

Or see this region's nucleotide sequence