Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0916 and Dshi_0917 are separated by 10 nucleotides Dshi_0917 and Dshi_0918 are separated by 250 nucleotides
Dshi_0916: Dshi_0916 - efflux transporter, RND family, MFP subunit (RefSeq), at 937,856 to 939,046
_0916
Dshi_0917: Dshi_0917 - acriflavin resistance protein (RefSeq), at 939,057 to 942,221
_0917
Dshi_0918: Dshi_0918 - Auxin Efflux Carrier (RefSeq), at 942,472 to 943,404
_0918
Position (kb) 939
940
941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.231 kb on + strand, within Dshi_0916 at 938.316 kb on - strand, within Dshi_0916 at 938.319 kb on + strand, within Dshi_0916 at 938.670 kb on - strand, within Dshi_0916 at 938.712 kb on - strand, within Dshi_0916 at 938.718 kb on + strand, within Dshi_0916 at 938.783 kb on + strand, within Dshi_0916 at 938.784 kb on - strand, within Dshi_0916 at 938.791 kb on + strand, within Dshi_0916 at 938.854 kb on + strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.876 kb on + strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 939.042 kb on + strand at 939.055 kb on + strand at 939.184 kb on - strand at 939.214 kb on + strand at 939.265 kb on - strand at 939.538 kb on - strand, within Dshi_0917 at 939.563 kb on + strand, within Dshi_0917 at 939.571 kb on - strand, within Dshi_0917 at 939.641 kb on + strand, within Dshi_0917 at 939.660 kb on - strand, within Dshi_0917 at 939.708 kb on + strand, within Dshi_0917 at 939.757 kb on - strand, within Dshi_0917 at 940.024 kb on + strand, within Dshi_0917 at 940.149 kb on - strand, within Dshi_0917 at 940.178 kb on + strand, within Dshi_0917 at 940.351 kb on + strand, within Dshi_0917 at 940.399 kb on + strand, within Dshi_0917 at 940.405 kb on - strand, within Dshi_0917 at 940.412 kb on - strand, within Dshi_0917 at 940.574 kb on + strand, within Dshi_0917 at 940.611 kb on - strand, within Dshi_0917 at 940.803 kb on + strand, within Dshi_0917 at 940.957 kb on + strand, within Dshi_0917 at 941.058 kb on - strand, within Dshi_0917 at 941.119 kb on - strand, within Dshi_0917 at 941.205 kb on - strand, within Dshi_0917 at 941.421 kb on - strand, within Dshi_0917 at 941.524 kb on + strand, within Dshi_0917 at 941.532 kb on - strand, within Dshi_0917 at 941.671 kb on + strand, within Dshi_0917 at 941.795 kb on + strand, within Dshi_0917 at 941.800 kb on + strand, within Dshi_0917 at 941.945 kb on + strand at 942.188 kb on - strand at 942.310 kb on + strand at 942.318 kb on - strand at 942.425 kb on - strand at 942.478 kb on - strand at 942.580 kb on + strand, within Dshi_0918 at 942.702 kb on + strand, within Dshi_0918 at 942.761 kb on + strand, within Dshi_0918 at 942.833 kb on + strand, within Dshi_0918 at 942.901 kb on + strand, within Dshi_0918 at 942.984 kb on + strand, within Dshi_0918 at 943.055 kb on + strand, within Dshi_0918
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 938,231 + Dshi_0916 0.31 -1.0 938,316 - Dshi_0916 0.39 +1.0 938,319 + Dshi_0916 0.39 -1.8 938,670 - Dshi_0916 0.68 +1.0 938,712 - Dshi_0916 0.72 -2.2 938,718 + Dshi_0916 0.72 -0.6 938,783 + Dshi_0916 0.78 +1.0 938,784 - Dshi_0916 0.78 -2.6 938,791 + Dshi_0916 0.79 -1.0 938,854 + Dshi_0916 0.84 +1.2 938,862 - Dshi_0916 0.84 +1.0 938,862 - Dshi_0916 0.84 -1.2 938,876 + Dshi_0916 0.86 -0.2 938,894 - Dshi_0916 0.87 -0.6 938,894 - Dshi_0916 0.87 +2.0 939,042 + -0.4 939,055 + -2.2 939,184 - -0.6 939,214 + -2.0 939,265 - +1.0 939,538 - Dshi_0917 0.15 -2.7 939,563 + Dshi_0917 0.16 +0.5 939,571 - Dshi_0917 0.16 +1.5 939,641 + Dshi_0917 0.18 -0.0 939,660 - Dshi_0917 0.19 -2.6 939,708 + Dshi_0917 0.21 -2.4 939,757 - Dshi_0917 0.22 +1.0 940,024 + Dshi_0917 0.31 -1.0 940,149 - Dshi_0917 0.35 +1.0 940,178 + Dshi_0917 0.35 +0.1 940,351 + Dshi_0917 0.41 -1.7 940,399 + Dshi_0917 0.42 -1.4 940,405 - Dshi_0917 0.43 +1.0 940,412 - Dshi_0917 0.43 +0.2 940,574 + Dshi_0917 0.48 -2.9 940,611 - Dshi_0917 0.49 +1.0 940,803 + Dshi_0917 0.55 +0.3 940,957 + Dshi_0917 0.60 -0.0 941,058 - Dshi_0917 0.63 +1.0 941,119 - Dshi_0917 0.65 -3.0 941,205 - Dshi_0917 0.68 -0.5 941,421 - Dshi_0917 0.75 +0.4 941,524 + Dshi_0917 0.78 +1.1 941,532 - Dshi_0917 0.78 -3.0 941,671 + Dshi_0917 0.83 +2.0 941,795 + Dshi_0917 0.87 +0.6 941,800 + Dshi_0917 0.87 -1.8 941,945 + +1.2 942,188 - +0.3 942,310 + -0.8 942,318 - -2.4 942,425 - +0.2 942,478 - -1.3 942,580 + Dshi_0918 0.12 -0.6 942,702 + Dshi_0918 0.25 -0.3 942,761 + Dshi_0918 0.31 -2.9 942,833 + Dshi_0918 0.39 -1.4 942,901 + Dshi_0918 0.46 -0.5 942,984 + Dshi_0918 0.55 -0.1 943,055 + Dshi_0918 0.62 -1.0
Or see this region's nucleotide sequence