Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0815 and Dshi_0816 are separated by 46 nucleotides Dshi_0816 and Dshi_0817 are separated by 76 nucleotides Dshi_0817 and Dshi_0818 overlap by 4 nucleotides Dshi_0818 and Dshi_0819 are separated by 24 nucleotides Dshi_0819 and Dshi_0820 are separated by 220 nucleotides
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522
_0817
Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725
_0818
Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046
_0819
Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034
_0820
Position (kb) 823
824 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 822.532 kb on - strand, within Dshi_0815 at 822.683 kb on - strand, within Dshi_0815 at 822.713 kb on - strand, within Dshi_0815 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815 at 822.993 kb on - strand, within Dshi_0816 at 823.175 kb on + strand at 823.242 kb on + strand at 823.242 kb on + strand at 823.267 kb on - strand at 823.288 kb on + strand, within Dshi_0817 at 823.306 kb on + strand, within Dshi_0817 at 823.321 kb on + strand, within Dshi_0817 at 823.384 kb on - strand, within Dshi_0817 at 823.573 kb on - strand, within Dshi_0818 at 823.708 kb on + strand at 823.793 kb on - strand, within Dshi_0819 at 823.830 kb on - strand, within Dshi_0819 at 823.857 kb on - strand, within Dshi_0819 at 823.908 kb on + strand, within Dshi_0819 at 823.942 kb on + strand, within Dshi_0819 at 823.957 kb on + strand, within Dshi_0819 at 823.974 kb on - strand, within Dshi_0819 at 824.006 kb on + strand, within Dshi_0819 at 824.077 kb on + strand at 824.085 kb on - strand at 824.101 kb on + strand at 824.101 kb on + strand at 824.109 kb on - strand at 824.167 kb on + strand at 824.319 kb on + strand at 824.451 kb on - strand, within Dshi_0820 at 824.451 kb on - strand, within Dshi_0820 at 824.686 kb on + strand, within Dshi_0820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 822,532 - Dshi_0815 0.20 -1.2 822,683 - Dshi_0815 0.57 -4.3 822,713 - Dshi_0815 0.64 +1.8 822,771 - Dshi_0815 0.78 -0.9 822,796 + Dshi_0815 0.84 +2.7 822,993 - Dshi_0816 0.30 +1.1 823,175 + +0.6 823,242 + +1.6 823,242 + -0.2 823,267 - +3.1 823,288 + Dshi_0817 0.10 +1.1 823,306 + Dshi_0817 0.17 +2.1 823,321 + Dshi_0817 0.23 +2.1 823,384 - Dshi_0817 0.47 +2.1 823,573 - Dshi_0818 0.26 +0.6 823,708 + -1.2 823,793 - Dshi_0819 0.14 -1.0 823,830 - Dshi_0819 0.27 +1.1 823,857 - Dshi_0819 0.36 -3.8 823,908 + Dshi_0819 0.53 +1.1 823,942 + Dshi_0819 0.65 -0.4 823,957 + Dshi_0819 0.70 -2.4 823,974 - Dshi_0819 0.75 +0.4 824,006 + Dshi_0819 0.86 +1.1 824,077 + +1.1 824,085 - +1.8 824,101 + -1.9 824,101 + +1.1 824,109 - +0.9 824,167 + -1.9 824,319 + -2.2 824,451 - Dshi_0820 0.24 -0.5 824,451 - Dshi_0820 0.24 +1.1 824,686 + Dshi_0820 0.55 +0.1
Or see this region's nucleotide sequence